Wall clock time and date at job start Sun Mar 29 2020 22:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08993 * 110.89211 * 54.29706 * 3 2 1 5 5 C 1.55160 * 111.00031 * 178.18171 * 3 2 1 6 6 C 1.54372 * 102.92049 * 153.54447 * 5 3 2 7 7 N 1.47026 * 107.28733 * 337.86240 * 6 5 3 8 8 C 1.34773 * 125.64595 * 178.94755 * 7 6 5 9 9 O 1.21693 * 119.99523 * 179.97438 * 8 7 6 10 10 C 1.46378 * 120.00509 * 359.95099 * 8 7 6 11 11 H 1.07996 * 119.99596 * 359.97438 * 10 8 7 12 12 C 1.40042 * 120.00214 * 180.02562 * 10 8 7 13 13 N 1.30675 * 119.99885 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 120.00021 * 180.02562 * 12 10 8 15 15 H 1.48492 * 109.47319 * 59.99386 * 14 12 10 16 16 H 1.48495 * 109.47340 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46696 * 299.99332 * 14 12 10 18 18 C 1.47419 * 108.70409 * 358.90227 * 7 6 5 19 19 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 20 20 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 21 21 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 22 22 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 23 23 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 24 24 H 1.08998 * 110.71543 * 271.93297 * 5 3 2 25 25 H 1.09000 * 110.72334 * 35.21108 * 5 3 2 26 26 H 1.08999 * 109.90139 * 218.41985 * 6 5 3 27 27 H 1.09008 * 109.97371 * 97.33717 * 6 5 3 28 28 H 0.97009 * 119.99649 * 180.02562 * 13 12 10 29 29 H 1.08996 * 110.37223 * 265.29400 * 18 7 6 30 30 H 1.08999 * 110.45981 * 143.01618 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6093 2.0070 0.8269 5 6 3.5903 1.4842 0.0460 6 6 3.9195 2.8329 -0.6291 7 7 2.7637 3.1988 -1.4608 8 6 2.6506 4.3212 -2.1983 9 8 1.6436 4.5209 -2.8517 10 6 3.7388 5.3001 -2.2130 11 1 4.6321 5.1232 -1.6325 12 6 3.6210 6.4666 -2.9789 13 7 2.5398 6.6809 -3.6808 14 14 5.0099 7.7155 -2.9981 15 1 6.2464 7.0729 -3.5110 16 1 4.6413 8.8524 -3.8795 17 1 5.2464 8.2140 -1.6194 18 6 1.7494 2.1342 -1.3554 19 1 -0.3635 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 3.9460 1.4709 1.0762 25 1 4.0154 0.6557 -0.5207 26 1 4.8071 2.7286 -1.2531 27 1 4.0875 3.5977 0.1293 28 1 2.4584 7.4888 -4.2116 29 1 1.8584 1.4238 -2.1748 30 1 0.7468 2.5617 -1.3558 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159701218.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:45 Heat of formation + Delta-G solvation = -78.299749 kcal Electronic energy + Delta-G solvation = -12644.397535 eV Core-core repulsion = 10437.819713 eV Total energy + Delta-G solvation = -2206.577822 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.29271 -37.98713 -34.77093 -34.53228 -31.10796 -29.56594 -27.93690 -25.01665 -22.90962 -21.38977 -20.81350 -18.60434 -17.65985 -16.88922 -16.19004 -15.67652 -15.14388 -14.55723 -14.26939 -14.13175 -13.74986 -13.45667 -13.16647 -13.01719 -12.70528 -12.64660 -12.49422 -12.07781 -11.95393 -11.49186 -11.44319 -11.35995 -10.95430 -9.92838 -9.11286 -8.33219 -6.89961 1.37263 1.41514 1.53691 2.21960 2.40933 2.88384 3.53705 3.65332 3.84788 3.96376 4.38528 4.43676 4.48272 4.57298 4.64319 4.82871 4.92974 5.01246 5.12277 5.16717 5.21664 5.25236 5.27885 5.43504 5.53555 5.64411 6.01083 6.39774 6.82014 7.45397 8.41329 8.63151 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.066502 B = 0.008845 C = 0.007954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.939668 B = 3164.726739 C = 3519.230517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.102 4.102 3 C -0.091 4.091 4 H 0.077 0.923 5 C -0.112 4.112 6 C 0.110 3.890 7 N -0.658 5.658 8 C 0.548 3.452 9 O -0.636 6.636 10 C -0.567 4.567 11 H 0.087 0.913 12 C 0.026 3.974 13 N -0.824 5.824 14 Si 1.002 2.998 15 H -0.253 1.253 16 H -0.272 1.272 17 H -0.252 1.252 18 C 0.114 3.886 19 H 0.071 0.929 20 H 0.055 0.945 21 H 0.035 0.965 22 H 0.065 0.935 23 H 0.091 0.909 24 H 0.106 0.894 25 H 0.086 0.914 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.276 0.724 29 H 0.042 0.958 30 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.937 -10.196 9.109 14.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.140 4.140 3 C -0.111 4.111 4 H 0.095 0.905 5 C -0.150 4.150 6 C -0.013 4.013 7 N -0.395 5.395 8 C 0.355 3.645 9 O -0.524 6.524 10 C -0.603 4.603 11 H 0.105 0.895 12 C -0.189 4.189 13 N -0.453 5.453 14 Si 0.820 3.180 15 H -0.177 1.177 16 H -0.196 1.196 17 H -0.176 1.176 18 C -0.009 4.009 19 H 0.090 0.910 20 H 0.075 0.925 21 H 0.054 0.946 22 H 0.084 0.916 23 H 0.110 0.890 24 H 0.124 0.876 25 H 0.105 0.895 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.060 0.940 30 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 3.283 -9.926 8.595 13.534 hybrid contribution 0.087 0.820 -0.486 0.957 sum 3.371 -9.106 8.109 12.650 Atomic orbital electron populations 1.21806 0.95962 1.02189 1.01298 1.21428 0.95842 0.93465 1.03272 1.22389 0.96420 0.97275 0.94971 0.90469 1.22709 0.94743 0.95302 1.02196 1.21886 0.88893 0.97192 0.93357 1.48590 1.19501 1.21069 1.50370 1.18475 0.87788 0.80314 0.77964 1.90538 1.34902 1.78604 1.48398 1.21388 1.03219 1.04634 1.31083 0.89500 1.27084 0.99127 1.00457 0.92236 1.70202 1.28289 1.25136 1.21693 0.85021 0.77156 0.76171 0.79635 1.17651 1.19616 1.17631 1.22053 0.91861 0.89239 0.97796 0.91023 0.92547 0.94597 0.91649 0.89042 0.87582 0.89496 0.93129 0.93068 0.91428 0.93978 0.95005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 9.79 71.98 0.70 -2.64 16 2 C -0.10 -2.17 5.44 30.59 0.17 -2.00 16 3 C -0.09 -2.61 3.04 -9.40 -0.03 -2.64 16 4 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 5 C -0.11 -2.89 6.42 31.80 0.20 -2.68 16 6 C 0.11 4.11 6.05 86.75 0.52 4.64 16 7 N -0.66 -32.60 3.33 -816.76 -2.72 -35.32 16 8 C 0.55 34.26 7.78 86.36 0.67 34.93 16 9 O -0.64 -45.69 15.28 -4.33 -0.07 -45.75 16 10 C -0.57 -33.78 9.06 24.83 0.23 -33.56 16 11 H 0.09 4.66 7.16 -2.91 -0.02 4.64 16 12 C 0.03 1.49 5.50 85.30 0.47 1.96 16 13 N -0.82 -52.28 11.83 21.83 0.26 -52.03 16 14 Si 1.00 41.95 29.56 68.60 2.03 43.97 16 15 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 16 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 17 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 18 C 0.11 4.73 5.71 86.86 0.50 5.23 16 19 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 20 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 21 H 0.03 0.92 7.59 -2.39 -0.02 0.90 16 22 H 0.06 1.38 8.04 -2.39 -0.02 1.36 16 23 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.09 1.97 8.04 -2.39 -0.02 1.95 16 26 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 28 H 0.28 15.77 8.29 -92.70 -0.77 15.00 16 29 H 0.04 1.72 7.96 -2.39 -0.02 1.71 16 30 H 0.03 1.47 8.00 -2.39 -0.02 1.46 16 Total: -1.00 -79.64 252.17 4.04 -75.60 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 1.10 Total: 10.29 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: 3.43 Total: 3.23 kcal Atomic # 7 Polarization: -84.89 SS G_CDS: -2.46 Total: -87.35 kcal Atomic # 8 Polarization: -45.69 SS G_CDS: -0.07 Total: -45.75 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Total: -79.64 4.04 -75.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159701218.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.696 kcal (2) G-P(sol) polarization free energy of solvation -79.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds