Wall clock time and date at job start Sun Mar 29 2020 21:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.47460 * 2 1 4 4 C 1.36935 * 120.00019 * 264.51726 * 3 2 1 5 5 H 1.07997 * 119.99810 * 146.54780 * 4 3 2 6 6 C 1.38809 * 120.00043 * 326.55033 * 4 3 2 7 7 N 1.31619 * 120.00364 * 337.33756 * 6 4 3 8 8 Si 1.86794 * 119.99829 * 157.33724 * 6 4 3 9 9 H 1.48501 * 109.47213 * 89.99937 * 8 6 4 10 10 H 1.48498 * 109.47398 * 209.99824 * 8 6 4 11 11 H 1.48500 * 109.47472 * 330.00195 * 8 6 4 12 12 C 1.46502 * 119.99732 * 84.51929 * 3 2 1 13 13 H 1.08999 * 109.24284 * 0.34433 * 12 3 2 14 14 C 1.50070 * 109.35926 * 119.99885 * 12 3 2 15 15 C 1.29441 * 124.07423 * 137.07584 * 14 12 3 16 16 C 1.50060 * 124.07594 * 359.79168 * 15 14 12 17 17 C 1.53033 * 110.15015 * 17.13172 * 16 15 14 18 18 C 1.52870 * 109.45651 * 240.85686 * 12 3 2 19 19 H 1.09004 * 109.47197 * 300.00284 * 1 2 3 20 20 H 1.09000 * 109.47249 * 59.99299 * 1 2 3 21 21 H 1.09000 * 109.47926 * 179.97438 * 1 2 3 22 22 H 1.09008 * 109.46845 * 240.00071 * 2 1 3 23 23 H 1.09000 * 109.47249 * 120.00701 * 2 1 3 24 24 H 0.97002 * 120.00423 * 179.97438 * 7 6 4 25 25 H 1.08000 * 117.95834 * 317.36133 * 14 12 3 26 26 H 1.07998 * 117.95971 * 179.77346 * 15 14 12 27 27 H 1.08999 * 109.35745 * 137.33787 * 16 15 14 28 28 H 1.09003 * 109.36157 * 257.06363 * 16 15 14 29 29 H 1.08998 * 109.63718 * 70.24487 * 17 16 15 30 30 H 1.08992 * 109.64602 * 190.87747 * 17 16 15 31 31 H 1.08999 * 109.70179 * 70.77935 * 18 12 3 32 32 H 1.08998 * 109.61577 * 310.33882 * 18 12 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3535 1.9890 -1.1805 5 1 2.1919 3.0493 -1.3068 6 6 2.9007 1.2422 -2.2147 7 7 3.5053 0.1023 -1.9550 8 14 2.7791 1.8550 -3.9750 9 1 3.9617 2.6965 -4.2890 10 1 2.7371 0.6951 -4.9013 11 1 1.5420 2.6608 -4.1344 12 6 2.1483 2.1122 1.2630 13 1 1.8425 1.4655 2.0854 14 6 3.5794 2.5202 1.4567 15 6 3.9502 3.6850 1.8825 16 6 3.0010 4.7916 2.2377 17 6 1.5902 4.2327 2.4358 18 6 1.2463 3.3460 1.2324 19 1 -0.3634 0.5139 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3635 -1.0276 -0.0005 22 1 1.8933 -0.5139 -0.8901 23 1 1.8933 -0.5139 0.8899 24 1 3.8874 -0.4198 -2.6778 25 1 4.3479 1.7985 1.2219 26 1 5.0086 3.8718 1.9890 27 1 3.3327 5.2702 3.1591 28 1 2.9863 5.5272 1.4334 29 1 1.5562 3.6396 3.3496 30 1 0.8767 5.0540 2.5016 31 1 0.2019 3.0392 1.2899 32 1 1.4151 3.8999 0.3089 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161126207.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:06 Heat of formation + Delta-G solvation = 23.139676 kcal Electronic energy + Delta-G solvation = -12859.920085 eV Core-core repulsion = 10820.885580 eV Total energy + Delta-G solvation = -2039.034505 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.04841 -34.97986 -31.40718 -30.27355 -29.99949 -27.38492 -24.22931 -22.15844 -21.35142 -20.14664 -17.42103 -16.17915 -15.32993 -14.69699 -14.03539 -13.60020 -13.28594 -12.84954 -12.33251 -11.97639 -11.83893 -11.77478 -11.30166 -11.17060 -10.84666 -10.61842 -10.34969 -10.30158 -10.02394 -9.66502 -9.46046 -9.30892 -8.38920 -8.20388 -6.53415 -5.72680 -3.24122 3.16631 3.39404 3.46863 3.50525 4.54344 5.33793 5.39399 5.44618 5.49366 5.76090 6.09876 6.11992 6.22080 6.23517 6.32757 6.38334 6.41048 6.50298 6.61219 6.66171 6.69667 6.91546 7.11959 7.17818 7.32878 7.52945 7.76974 7.82095 7.91714 8.57469 9.26889 9.90670 10.46690 11.28893 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.033796 B = 0.013673 C = 0.011688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.310850 B = 2047.351015 C = 2395.062724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.138 3.862 3 N -0.579 5.579 4 C -0.244 4.244 5 H 0.062 0.938 6 C 0.005 3.995 7 N -0.892 5.892 8 Si 0.894 3.106 9 H -0.287 1.287 10 H -0.290 1.290 11 H -0.279 1.279 12 C 0.196 3.804 13 H 0.056 0.944 14 C -0.108 4.108 15 C -0.199 4.199 16 C -0.079 4.079 17 C -0.117 4.117 18 C -0.125 4.125 19 H 0.032 0.968 20 H 0.048 0.952 21 H 0.033 0.967 22 H 0.100 0.900 23 H 0.018 0.982 24 H 0.253 0.747 25 H 0.098 0.902 26 H 0.087 0.913 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.956 4.267 6.429 8.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.012 3.988 3 N -0.299 5.299 4 C -0.374 4.374 5 H 0.079 0.921 6 C -0.194 4.194 7 N -0.535 5.535 8 Si 0.723 3.277 9 H -0.214 1.214 10 H -0.216 1.216 11 H -0.205 1.205 12 C 0.089 3.911 13 H 0.074 0.926 14 C -0.128 4.128 15 C -0.218 4.218 16 C -0.116 4.116 17 C -0.155 4.155 18 C -0.164 4.164 19 H 0.051 0.949 20 H 0.067 0.933 21 H 0.052 0.948 22 H 0.117 0.883 23 H 0.036 0.964 24 H 0.063 0.937 25 H 0.116 0.884 26 H 0.105 0.895 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.873 4.115 6.302 8.056 hybrid contribution 0.145 0.257 -1.047 1.088 sum -2.727 4.372 5.255 7.360 Atomic orbital electron populations 1.22350 1.01011 0.98590 1.00343 1.20984 0.89686 0.86373 1.01770 1.43966 1.73762 1.11297 1.00864 1.18971 1.34552 0.93856 0.90004 0.92078 1.25041 0.97314 0.97984 0.99030 1.70001 1.36789 1.15817 1.30928 0.86441 0.78039 0.77837 0.85360 1.21446 1.21600 1.20470 1.19288 0.90073 0.92269 0.89509 0.92591 1.22847 0.99555 0.96606 0.93764 1.21762 0.98169 0.95682 1.06209 1.20296 0.94357 0.96898 1.00008 1.21608 0.96060 0.98879 0.98962 1.21965 0.99124 0.97638 0.97679 0.94920 0.93322 0.94805 0.88277 0.96353 0.93742 0.88401 0.89490 0.92631 0.91993 0.92561 0.92851 0.92934 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.35 10.23 37.15 0.38 -2.97 16 2 C 0.14 3.29 5.90 -4.04 -0.02 3.27 16 3 N -0.58 -14.39 2.38 -167.40 -0.40 -14.78 16 4 C -0.24 -6.64 8.53 -15.06 -0.13 -6.77 16 5 H 0.06 1.68 6.70 -52.49 -0.35 1.33 16 6 C 0.01 0.15 4.91 -17.43 -0.09 0.06 16 7 N -0.89 -25.75 11.33 55.49 0.63 -25.12 16 8 Si 0.89 21.84 29.61 -169.99 -5.03 16.81 16 9 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 C 0.20 4.19 2.87 -69.45 -0.20 3.99 16 13 H 0.06 1.15 7.85 -51.93 -0.41 0.75 16 14 C -0.11 -2.28 8.77 -35.90 -0.32 -2.60 16 15 C -0.20 -3.68 9.80 -35.90 -0.35 -4.03 16 16 C -0.08 -1.24 6.12 -28.18 -0.17 -1.42 16 17 C -0.12 -1.84 6.01 -26.51 -0.16 -2.00 16 18 C -0.12 -2.38 5.41 -26.59 -0.14 -2.52 16 19 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 20 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 21 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.10 2.67 5.33 -51.92 -0.28 2.40 16 23 H 0.02 0.42 8.03 -51.93 -0.42 0.00 16 24 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 25 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 26 H 0.09 1.50 8.06 -52.49 -0.42 1.08 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 1.44 6.64 -51.93 -0.34 1.09 16 LS Contribution 257.30 15.07 3.88 3.88 Total: -1.00 -28.21 257.30 -7.28 -35.49 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -5.16 Total: -1.29 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -1.20 Total: -14.98 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.23 Total: -39.91 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.21 -7.28 -35.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161126207.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.631 kcal (2) G-P(sol) polarization free energy of solvation -28.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds