Wall clock time and date at job start Sun Mar 29 2020 21:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46902 * 110.99796 * 2 1 4 4 C 1.50702 * 109.47083 * 293.94976 * 3 2 1 5 5 H 1.08001 * 119.99759 * 0.02562 * 4 3 2 6 6 C 1.37867 * 119.99788 * 179.97438 * 4 3 2 7 7 N 1.31505 * 120.00511 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99804 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47324 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47180 * 120.00150 * 8 6 4 11 11 H 1.48494 * 109.47543 * 239.99869 * 8 6 4 12 12 C 1.46901 * 110.99909 * 123.95288 * 2 1 3 13 13 H 1.08995 * 109.35727 * 185.77332 * 12 2 1 14 14 C 1.50074 * 109.24432 * 305.42884 * 12 2 1 15 15 C 1.29445 * 124.07514 * 137.27262 * 14 12 2 16 16 C 1.50066 * 124.07462 * 359.52270 * 15 14 12 17 17 C 1.53020 * 110.14929 * 17.13805 * 16 15 14 18 18 C 1.53022 * 109.35878 * 66.04498 * 12 2 1 19 19 H 1.08993 * 109.47300 * 296.04652 * 1 2 3 20 20 H 1.09000 * 109.47064 * 56.05155 * 1 2 3 21 21 H 1.09006 * 109.46975 * 176.04861 * 1 2 3 22 22 H 1.08996 * 109.47156 * 53.94936 * 3 2 1 23 23 H 1.08997 * 109.46935 * 173.95062 * 3 2 1 24 24 H 0.97007 * 120.00987 * 180.02562 * 7 6 4 25 25 H 1.08001 * 117.96056 * 317.28993 * 14 12 2 26 26 H 1.08002 * 117.96033 * 179.81016 * 15 14 12 27 27 H 1.08999 * 109.35552 * 137.34338 * 16 15 14 28 28 H 1.08995 * 109.35735 * 256.92543 * 16 15 14 29 29 H 1.08995 * 109.64347 * 70.24041 * 17 16 15 30 30 H 1.08992 * 109.64631 * 190.87834 * 17 16 15 31 31 H 1.08997 * 109.64061 * 70.80889 * 18 12 2 32 32 H 1.08996 * 109.64212 * 310.18032 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0740 1.5114 -2.0485 6 6 2.0268 3.3494 -1.5285 7 7 2.7118 4.0019 -0.6150 8 14 1.5818 4.1871 -3.1378 9 1 0.8138 3.2448 -3.9906 10 1 0.7542 5.3881 -2.8584 11 1 2.8231 4.5948 -3.8434 12 6 1.9954 -0.7660 1.1376 13 1 3.0801 -0.6638 1.1710 14 6 1.4059 -0.2306 2.4096 15 6 0.9745 -0.9734 3.3780 16 6 0.9943 -2.4738 3.3597 17 6 1.9515 -2.9753 2.2763 18 6 1.6300 -2.2422 0.9678 19 1 -0.3633 0.4512 0.9232 20 1 -0.3633 0.5739 -0.8525 21 1 -0.3633 -1.0253 -0.0708 22 1 1.5610 1.9274 0.8308 23 1 3.0797 1.3444 0.1083 24 1 2.9858 4.9183 -0.7766 25 1 1.3370 0.8411 2.5241 26 1 0.5713 -0.4828 4.2516 27 1 1.3232 -2.8426 4.3313 28 1 -0.0096 -2.8459 3.1553 29 1 2.9799 -2.7657 2.5705 30 1 1.8182 -4.0480 2.1375 31 1 2.2131 -2.6727 0.1538 32 1 0.5662 -2.3334 0.7486 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162098727.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:47 Heat of formation + Delta-G solvation = 9.065711 kcal Electronic energy + Delta-G solvation = -12521.351955 eV Core-core repulsion = 10481.707157 eV Total energy + Delta-G solvation = -2039.644798 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.83959 -35.19754 -32.45522 -30.72798 -29.08692 -27.01054 -25.03443 -22.64908 -21.61789 -20.15717 -17.38305 -16.47121 -15.66986 -14.93376 -14.30711 -13.89677 -13.80858 -13.02550 -12.47686 -12.38762 -12.18092 -11.91018 -11.67554 -11.22541 -10.90478 -10.82667 -10.64391 -10.36215 -10.17577 -9.92451 -9.66801 -9.13487 -8.67737 -8.41764 -7.16410 -6.00384 -4.01421 2.65388 3.32311 3.39575 3.44760 4.44711 4.92535 5.06609 5.09684 5.34410 5.41444 5.57591 5.68361 5.78704 5.89099 5.98358 6.05194 6.16245 6.22268 6.33480 6.41911 6.60114 6.72200 6.84373 6.97989 7.22369 7.37664 7.43324 7.84025 8.13349 8.25636 8.60062 9.06846 9.62659 11.10497 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.072811 B = 0.008302 C = 0.008011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.467213 B = 3372.018574 C = 3494.137317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.531 5.531 3 C 0.191 3.809 4 C -0.506 4.506 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.108 3.892 13 H 0.082 0.918 14 C -0.160 4.160 15 C -0.173 4.173 16 C -0.085 4.085 17 C -0.119 4.119 18 C -0.109 4.109 19 H 0.014 0.986 20 H 0.071 0.929 21 H 0.045 0.955 22 H -0.007 1.007 23 H 0.028 0.972 24 H 0.260 0.740 25 H 0.103 0.897 26 H 0.093 0.907 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.924 -10.657 5.758 12.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.253 5.253 3 C 0.066 3.934 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.210 1.210 12 C 0.000 4.000 13 H 0.100 0.900 14 C -0.180 4.180 15 C -0.192 4.192 16 C -0.122 4.122 17 C -0.157 4.157 18 C -0.147 4.147 19 H 0.032 0.968 20 H 0.090 0.910 21 H 0.064 0.936 22 H 0.010 0.990 23 H 0.046 0.954 24 H 0.070 0.930 25 H 0.121 0.879 26 H 0.111 0.889 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.679 -10.693 5.326 12.243 hybrid contribution -0.469 1.212 0.070 1.301 sum -3.148 -9.481 5.396 11.354 Atomic orbital electron populations 1.22221 0.89137 0.99481 1.00397 1.62398 1.07021 1.17832 1.38082 1.19745 0.95282 0.81852 0.96539 1.21227 1.34581 0.96888 1.01752 0.91821 1.24992 0.95359 0.97374 0.96982 1.69968 1.38557 1.11347 1.34035 0.86452 0.78141 0.79296 0.83597 1.19665 1.21160 1.21012 1.20658 0.99113 0.93182 0.87095 0.89993 1.23022 0.98320 1.00313 0.96334 1.21911 1.03063 0.95367 0.98879 1.20386 0.99612 0.93417 0.98775 1.21611 0.99470 0.99115 0.95515 1.21643 1.01853 0.94595 0.96641 0.96774 0.90988 0.93583 0.98971 0.95357 0.93031 0.87863 0.88863 0.91861 0.91555 0.91930 0.92072 0.91410 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 8.79 60.07 0.53 1.26 16 2 N -0.53 -11.78 4.70 -238.09 -1.12 -12.90 16 3 C 0.19 5.07 4.36 -4.97 -0.02 5.05 16 4 C -0.51 -14.46 8.46 -34.44 -0.29 -14.75 16 5 H 0.06 1.81 7.12 -52.49 -0.37 1.43 16 6 C 0.05 1.55 5.46 -17.83 -0.10 1.45 16 7 N -0.90 -27.05 13.28 55.43 0.74 -26.32 16 8 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 9 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 C 0.11 2.03 2.46 -69.16 -0.17 1.86 16 13 H 0.08 1.59 7.93 -51.93 -0.41 1.18 16 14 C -0.16 -2.86 7.16 -35.90 -0.26 -3.12 16 15 C -0.17 -2.60 9.80 -35.90 -0.35 -2.95 16 16 C -0.08 -1.06 6.11 -28.18 -0.17 -1.23 16 17 C -0.12 -1.51 6.01 -26.51 -0.16 -1.67 16 18 C -0.11 -1.68 5.41 -26.51 -0.14 -1.82 16 19 H 0.01 0.28 6.93 -51.93 -0.36 -0.08 16 20 H 0.07 1.56 6.76 -51.93 -0.35 1.20 16 21 H 0.05 0.81 6.28 -51.93 -0.33 0.49 16 22 H -0.01 -0.21 6.94 -51.93 -0.36 -0.57 16 23 H 0.03 0.80 7.93 -51.93 -0.41 0.39 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.10 2.07 6.84 -52.49 -0.36 1.71 16 26 H 0.09 1.30 8.06 -52.49 -0.42 0.87 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.79 8.12 -51.93 -0.42 0.37 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 1.01 6.13 -51.93 -0.32 0.69 16 LS Contribution 252.79 15.07 3.81 3.81 Total: -1.00 -29.66 252.79 -7.67 -37.34 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -4.94 Total: -2.88 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -1.14 Total: -15.92 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: -0.38 Total: -39.22 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -29.66 -7.67 -37.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162098727.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.402 kcal (2) G-P(sol) polarization free energy of solvation -29.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds