Wall clock time and date at job start Sun Mar 29 2020 21:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46902 * 110.99796 * 2 1 4 4 C 1.50702 * 109.47083 * 293.94976 * 3 2 1 5 5 H 1.08001 * 119.99759 * 0.02562 * 4 3 2 6 6 C 1.37867 * 119.99788 * 179.97438 * 4 3 2 7 7 N 1.31505 * 120.00511 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99804 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47324 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47180 * 120.00150 * 8 6 4 11 11 H 1.48494 * 109.47543 * 239.99869 * 8 6 4 12 12 C 1.46901 * 110.99909 * 123.95288 * 2 1 3 13 13 H 1.08995 * 109.35727 * 185.77332 * 12 2 1 14 14 C 1.50074 * 109.24432 * 305.42884 * 12 2 1 15 15 C 1.29445 * 124.07514 * 137.27262 * 14 12 2 16 16 C 1.50066 * 124.07462 * 359.52270 * 15 14 12 17 17 C 1.53020 * 110.14929 * 17.13805 * 16 15 14 18 18 C 1.53022 * 109.35878 * 66.04498 * 12 2 1 19 19 H 1.08993 * 109.47300 * 296.04652 * 1 2 3 20 20 H 1.09000 * 109.47064 * 56.05155 * 1 2 3 21 21 H 1.09006 * 109.46975 * 176.04861 * 1 2 3 22 22 H 1.08996 * 109.47156 * 53.94936 * 3 2 1 23 23 H 1.08997 * 109.46935 * 173.95062 * 3 2 1 24 24 H 0.97007 * 120.00987 * 180.02562 * 7 6 4 25 25 H 1.08001 * 117.96056 * 317.28993 * 14 12 2 26 26 H 1.08002 * 117.96033 * 179.81016 * 15 14 12 27 27 H 1.08999 * 109.35552 * 137.34338 * 16 15 14 28 28 H 1.08995 * 109.35735 * 256.92543 * 16 15 14 29 29 H 1.08995 * 109.64347 * 70.24041 * 17 16 15 30 30 H 1.08992 * 109.64631 * 190.87834 * 17 16 15 31 31 H 1.08997 * 109.64061 * 70.80889 * 18 12 2 32 32 H 1.08996 * 109.64212 * 310.18032 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0740 1.5114 -2.0485 6 6 2.0268 3.3494 -1.5285 7 7 2.7118 4.0019 -0.6150 8 14 1.5818 4.1871 -3.1378 9 1 0.8138 3.2448 -3.9906 10 1 0.7542 5.3881 -2.8584 11 1 2.8231 4.5948 -3.8434 12 6 1.9954 -0.7660 1.1376 13 1 3.0801 -0.6638 1.1710 14 6 1.4059 -0.2306 2.4096 15 6 0.9745 -0.9734 3.3780 16 6 0.9943 -2.4738 3.3597 17 6 1.9515 -2.9753 2.2763 18 6 1.6300 -2.2422 0.9678 19 1 -0.3633 0.4512 0.9232 20 1 -0.3633 0.5739 -0.8525 21 1 -0.3633 -1.0253 -0.0708 22 1 1.5610 1.9274 0.8308 23 1 3.0797 1.3444 0.1083 24 1 2.9858 4.9183 -0.7766 25 1 1.3370 0.8411 2.5241 26 1 0.5713 -0.4828 4.2516 27 1 1.3232 -2.8426 4.3313 28 1 -0.0096 -2.8459 3.1553 29 1 2.9799 -2.7657 2.5705 30 1 1.8182 -4.0480 2.1375 31 1 2.2131 -2.6727 0.1538 32 1 0.5662 -2.3334 0.7486 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162098727.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:46 Heat of formation + Delta-G solvation = -9.948690 kcal Electronic energy + Delta-G solvation = -12522.176482 eV Core-core repulsion = 10481.707157 eV Total energy + Delta-G solvation = -2040.469325 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.26266 -36.79870 -34.57068 -31.96079 -30.60772 -28.92968 -26.80544 -24.27078 -22.93441 -21.81900 -18.75399 -18.49513 -17.12446 -16.82484 -15.98330 -15.51164 -15.25313 -14.55231 -13.93378 -13.85074 -13.60105 -13.49090 -13.30194 -12.93753 -12.67663 -12.62315 -12.32726 -12.02479 -11.72737 -11.45225 -11.17965 -11.00891 -10.63957 -9.97232 -8.97650 -8.21900 -6.32732 1.33466 1.39690 1.40385 1.54472 2.39347 3.10051 3.38432 3.83321 3.91360 4.18412 4.34875 4.41161 4.54589 4.62482 4.68456 4.76863 4.82491 4.98545 5.05257 5.11251 5.18463 5.20691 5.26859 5.46243 5.48756 5.64401 5.70884 5.97109 6.05710 6.35262 6.66662 6.84607 7.37231 8.89428 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.072811 B = 0.008302 C = 0.008011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.467213 B = 3372.018574 C = 3494.137317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.540 5.540 3 C 0.210 3.790 4 C -0.525 4.525 5 H 0.064 0.936 6 C -0.001 4.001 7 N -0.936 5.936 8 Si 0.973 3.027 9 H -0.262 1.262 10 H -0.278 1.278 11 H -0.277 1.277 12 C 0.107 3.893 13 H 0.061 0.939 14 C -0.198 4.198 15 C -0.139 4.139 16 C -0.086 4.086 17 C -0.114 4.114 18 C -0.103 4.103 19 H 0.009 0.991 20 H 0.054 0.946 21 H 0.079 0.921 22 H -0.037 1.037 23 H -0.004 1.004 24 H 0.264 0.736 25 H 0.066 0.934 26 H 0.107 0.893 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.007 -12.547 5.777 14.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.262 5.262 3 C 0.083 3.917 4 C -0.563 4.563 5 H 0.082 0.918 6 C -0.199 4.199 7 N -0.577 5.577 8 Si 0.797 3.203 9 H -0.186 1.186 10 H -0.203 1.203 11 H -0.203 1.203 12 C -0.001 4.001 13 H 0.079 0.921 14 C -0.218 4.218 15 C -0.158 4.158 16 C -0.123 4.123 17 C -0.152 4.152 18 C -0.140 4.140 19 H 0.028 0.972 20 H 0.072 0.928 21 H 0.098 0.902 22 H -0.020 1.020 23 H 0.014 0.986 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.125 0.875 27 H 0.110 0.890 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.087 0.913 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.768 -12.608 5.356 14.207 hybrid contribution -0.129 1.747 0.174 1.760 sum -3.897 -10.861 5.530 12.795 Atomic orbital electron populations 1.22174 0.87831 1.01167 0.99318 1.62326 1.08232 1.15136 1.40520 1.19336 0.93159 0.84255 0.94930 1.21542 1.34827 0.97592 1.02381 0.91812 1.25971 0.94973 0.98054 1.00907 1.70103 1.39448 1.11846 1.36274 0.85284 0.78123 0.78143 0.78755 1.18613 1.20341 1.20262 1.20712 0.97899 0.95096 0.86420 0.92129 1.22660 1.02627 0.98741 0.97748 1.22287 0.98794 0.97285 0.97456 1.20525 1.00770 0.90771 1.00218 1.21619 0.99407 1.00478 0.93700 1.21612 1.01961 0.91833 0.98627 0.97249 0.92764 0.90212 1.01980 0.98567 0.92689 0.91593 0.87538 0.89043 0.89587 0.92205 0.88969 0.91330 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.76 8.79 127.69 1.12 2.89 16 2 N -0.54 -24.71 4.70 -907.17 -4.26 -28.98 16 3 C 0.21 11.79 4.36 85.56 0.37 12.16 16 4 C -0.53 -30.97 8.46 25.60 0.22 -30.75 16 5 H 0.06 3.68 7.12 -2.91 -0.02 3.66 16 6 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 7 N -0.94 -58.06 13.28 21.44 0.28 -57.78 16 8 Si 0.97 45.35 29.54 68.60 2.03 47.37 16 9 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 C 0.11 4.09 2.46 43.98 0.11 4.19 16 13 H 0.06 2.49 7.93 -2.39 -0.02 2.47 16 14 C -0.20 -7.21 7.16 27.04 0.19 -7.02 16 15 C -0.14 -3.91 9.80 27.03 0.27 -3.65 16 16 C -0.09 -1.78 6.11 29.66 0.18 -1.60 16 17 C -0.11 -2.48 6.01 30.73 0.18 -2.29 16 18 C -0.10 -2.94 5.41 30.74 0.17 -2.78 16 19 H 0.01 0.38 6.93 -2.39 -0.02 0.36 16 20 H 0.05 2.37 6.76 -2.39 -0.02 2.36 16 21 H 0.08 2.69 6.28 -2.38 -0.01 2.67 16 22 H -0.04 -2.28 6.94 -2.39 -0.02 -2.30 16 23 H 0.00 -0.23 7.93 -2.39 -0.02 -0.25 16 24 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 25 H 0.07 2.85 6.84 -2.91 -0.02 2.83 16 26 H 0.11 2.72 8.06 -2.91 -0.02 2.69 16 27 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.06 1.35 8.12 -2.39 -0.02 1.33 16 30 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.07 1.93 6.13 -2.39 -0.01 1.91 16 Total: -1.00 -66.19 252.79 2.39 -63.80 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: 1.07 Total: 4.04 kcal Atomic # 6 Polarization: -31.73 SS G_CDS: 3.27 Total: -28.46 kcal Atomic # 7 Polarization: -82.77 SS G_CDS: -3.98 Total: -86.75 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -66.19 2.39 -63.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162098727.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.850 kcal (2) G-P(sol) polarization free energy of solvation -66.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds