Wall clock time and date at job start Sun Mar 29 2020 21:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86805 * 120.00058 * 2 1 4 4 H 1.48494 * 109.47043 * 94.63579 * 3 2 1 5 5 H 1.48495 * 109.47306 * 214.63967 * 3 2 1 6 6 H 1.48499 * 109.46710 * 334.63669 * 3 2 1 7 7 C 1.40047 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00256 * 8.68049 * 7 2 1 9 9 C 1.46372 * 120.00179 * 188.68914 * 7 2 1 10 10 O 1.21687 * 120.00114 * 14.96717 * 9 7 2 11 11 N 1.34781 * 120.00384 * 194.97291 * 9 7 2 12 12 C 1.46859 * 120.37691 * 354.76968 * 11 9 7 13 13 C 1.53888 * 108.51114 * 122.34411 * 12 11 9 14 14 C 1.51297 * 108.37024 * 49.64228 * 13 12 11 15 15 O 1.20760 * 120.80428 * 126.92799 * 14 13 12 16 16 C 1.51293 * 118.38979 * 306.90936 * 14 13 12 17 17 C 1.46856 * 120.38485 * 175.04456 * 11 9 7 18 18 H 0.96996 * 120.00050 * 0.02562 * 1 2 3 19 19 H 1.08997 * 109.58415 * 242.16366 * 12 11 9 20 20 H 1.09000 * 109.58501 * 2.59130 * 12 11 9 21 21 H 1.09003 * 109.80987 * 289.86281 * 13 12 11 22 22 H 1.08999 * 109.62065 * 169.31076 * 13 12 11 23 23 H 1.09006 * 109.67296 * 293.22668 * 16 14 13 24 24 H 1.09001 * 109.70482 * 172.71259 * 16 14 13 25 25 H 1.08998 * 109.58311 * 357.40828 * 17 11 9 26 26 H 1.08994 * 109.58698 * 117.69068 * 17 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.5862 1.9898 1.3954 5 1 3.4858 1.4705 -0.7958 6 1 1.3925 2.6789 -0.5997 7 6 2.0070 -1.2128 0.0005 8 1 1.4763 -2.1429 -0.1402 9 6 3.4581 -1.2200 0.1920 10 8 4.0206 -0.2283 0.6172 11 7 4.1713 -2.3250 -0.1026 12 6 3.4910 -3.5622 -0.5067 13 6 4.0148 -3.9774 -1.8928 14 6 5.5272 -3.9536 -1.8578 15 8 6.1690 -4.9178 -2.1994 16 6 6.2160 -2.6923 -1.3848 17 6 5.6373 -2.3076 -0.0173 18 1 -0.4850 0.8400 -0.0004 19 1 3.7024 -4.3488 0.2176 20 1 2.4161 -3.3884 -0.5572 21 1 3.6542 -3.2794 -2.6483 22 1 3.6690 -4.9839 -2.1283 23 1 6.0381 -1.8875 -2.0982 24 1 7.2873 -2.8710 -1.2929 25 1 5.9755 -1.3076 0.2543 26 1 5.9681 -3.0224 0.7360 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169807376.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:32 Heat of formation + Delta-G solvation = -84.337805 kcal Electronic energy + Delta-G solvation = -12621.016977 eV Core-core repulsion = 10278.344230 eV Total energy + Delta-G solvation = -2342.672746 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.68571 -38.02146 -35.26941 -32.94712 -31.31607 -30.33406 -26.78167 -23.51310 -23.29015 -20.21933 -18.52952 -16.88916 -16.21729 -15.32543 -15.10781 -14.69566 -14.46834 -14.40731 -13.87833 -12.66880 -12.46737 -12.31545 -12.05436 -11.68859 -11.51249 -11.19594 -10.90753 -10.86716 -10.44333 -9.62650 -9.18458 -9.09731 -8.01477 -7.76587 -6.70187 -4.93533 2.11626 3.38932 3.43439 3.65781 3.97715 4.11433 4.36287 4.48356 5.07329 5.19604 5.24728 5.31610 5.43490 5.71697 5.79236 6.03263 6.10421 6.17149 6.27483 6.31176 6.94401 7.47882 7.64581 7.76427 8.18941 8.59762 9.00833 9.90714 10.30167 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.056489 B = 0.011542 C = 0.010344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.551785 B = 2425.382021 C = 2706.266267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.102 3.898 3 Si 0.965 3.035 4 H -0.277 1.277 5 H -0.265 1.265 6 H -0.320 1.320 7 C -0.534 4.534 8 H 0.093 0.907 9 C 0.554 3.446 10 O -0.613 6.613 11 N -0.637 5.637 12 C 0.126 3.874 13 C -0.185 4.185 14 C 0.367 3.633 15 O -0.474 6.474 16 C -0.184 4.184 17 C 0.124 3.876 18 H 0.283 0.717 19 H 0.054 0.946 20 H 0.113 0.887 21 H 0.103 0.897 22 H 0.090 0.910 23 H 0.100 0.900 24 H 0.089 0.911 25 H 0.098 0.902 26 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.935 -4.684 -2.816 8.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.116 4.116 3 Si 0.798 3.202 4 H -0.203 1.203 5 H -0.190 1.190 6 H -0.252 1.252 7 C -0.570 4.570 8 H 0.110 0.890 9 C 0.364 3.636 10 O -0.505 6.505 11 N -0.371 5.371 12 C 0.002 3.998 13 C -0.224 4.224 14 C 0.244 3.756 15 O -0.349 6.349 16 C -0.223 4.223 17 C 0.000 4.000 18 H 0.093 0.907 19 H 0.072 0.928 20 H 0.131 0.869 21 H 0.122 0.878 22 H 0.108 0.892 23 H 0.118 0.882 24 H 0.107 0.893 25 H 0.117 0.883 26 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.354 -4.657 -2.761 8.348 hybrid contribution 0.212 0.602 -0.062 0.642 sum 6.566 -4.055 -2.823 8.217 Atomic orbital electron populations 1.69547 1.07947 1.30146 1.37822 1.25760 0.94738 1.02045 0.89064 0.85250 0.77783 0.77455 0.79748 1.20343 1.18998 1.25163 1.20778 0.88923 0.95853 1.51420 0.88952 1.18358 0.88348 0.80141 0.76784 1.90218 1.72692 1.33919 1.53676 1.47786 1.04330 1.12427 1.72551 1.21604 1.00205 0.86457 0.91575 1.22835 0.94021 1.04077 1.01488 1.24889 0.92208 0.87538 0.70951 1.90359 1.69696 1.37336 1.37508 1.22734 1.00975 0.97990 1.00614 1.21181 0.82379 1.03218 0.93225 0.90670 0.92761 0.86919 0.87840 0.89186 0.88214 0.89286 0.88334 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.58 13.92 55.55 0.77 -21.81 15 2 C 0.10 2.80 5.52 -17.37 -0.10 2.71 15 3 Si 0.97 24.56 25.88 -169.99 -4.40 20.16 15 4 H -0.28 -7.30 7.11 56.52 0.40 -6.89 15 5 H -0.26 -7.00 6.65 56.52 0.38 -6.63 15 6 H -0.32 -7.74 7.11 56.52 0.40 -7.34 15 7 C -0.53 -14.24 9.35 -35.63 -0.33 -14.57 15 8 H 0.09 2.41 5.94 -52.48 -0.31 2.09 15 9 C 0.55 13.96 7.27 -12.99 -0.09 13.86 15 10 O -0.61 -16.97 11.82 5.20 0.06 -16.91 15 11 N -0.64 -12.86 2.90 -173.99 -0.50 -13.36 15 12 C 0.13 2.11 6.39 -3.38 -0.02 2.09 15 13 C -0.19 -2.70 6.36 -27.13 -0.17 -2.87 15 14 C 0.37 5.71 6.68 -28.45 -0.19 5.52 15 15 O -0.47 -8.41 17.89 6.00 0.11 -8.31 15 16 C -0.18 -2.70 6.34 -27.39 -0.17 -2.87 15 17 C 0.12 2.12 6.44 -3.64 -0.02 2.10 15 18 H 0.28 7.14 8.29 -40.82 -0.34 6.81 15 19 H 0.05 0.82 8.14 -51.93 -0.42 0.40 15 20 H 0.11 2.02 5.29 -51.93 -0.27 1.74 15 21 H 0.10 1.49 8.14 -51.93 -0.42 1.07 15 22 H 0.09 1.15 8.14 -51.93 -0.42 0.73 15 23 H 0.10 1.44 8.14 -51.93 -0.42 1.02 15 24 H 0.09 1.14 8.14 -51.93 -0.42 0.72 15 25 H 0.10 1.82 6.97 -51.93 -0.36 1.46 15 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 15 LS Contribution 222.95 15.07 3.36 3.36 Total: -1.00 -30.95 222.95 -4.35 -35.30 By element: Atomic # 1 Polarization: -1.76 SS G_CDS: -2.64 Total: -4.40 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: -1.10 Total: 5.97 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.27 Total: -35.17 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: 0.17 Total: -25.21 kcal Atomic # 14 Polarization: 24.56 SS G_CDS: -4.40 Total: 20.16 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -30.95 -4.35 -35.30 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169807376.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.038 kcal (2) G-P(sol) polarization free energy of solvation -30.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds