Wall clock time and date at job start Sun Mar 29 2020 21:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47455 * 2 1 4 4 C 1.52998 * 109.47351 * 239.99892 * 2 1 3 5 5 C 1.50699 * 109.47007 * 120.00045 * 2 1 3 6 6 N 1.30741 * 126.40594 * 239.95623 * 5 2 1 7 7 N 1.28412 * 110.67579 * 180.02562 * 6 5 2 8 8 N 1.28936 * 110.31887 * 359.70909 * 7 6 5 9 9 N 1.35567 * 126.41140 * 60.00010 * 5 2 1 10 10 C 1.37607 * 127.42274 * 359.96162 * 9 5 2 11 11 H 1.08002 * 120.00435 * 0.02562 * 10 9 5 12 12 C 1.39023 * 119.99937 * 179.72523 * 10 9 5 13 13 N 1.31244 * 119.99848 * 0.27748 * 12 10 9 14 14 Si 1.86798 * 120.00385 * 180.27894 * 12 10 9 15 15 H 1.48504 * 109.46902 * 59.99816 * 14 12 10 16 16 H 1.48498 * 109.47594 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46858 * 300.00052 * 14 12 10 18 18 H 1.09004 * 109.47210 * 299.99940 * 1 2 3 19 19 H 1.09000 * 109.47123 * 59.99773 * 1 2 3 20 20 H 1.08994 * 109.46995 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.47589 * 180.02562 * 3 2 1 22 22 H 1.09000 * 109.47140 * 300.00216 * 3 2 1 23 23 H 1.09004 * 109.46862 * 59.99847 * 3 2 1 24 24 H 1.09004 * 109.47133 * 300.00031 * 4 2 1 25 25 H 1.08998 * 109.46987 * 59.99624 * 4 2 1 26 26 H 1.09003 * 109.47601 * 179.97438 * 4 2 1 27 27 H 0.97000 * 119.99424 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 7 2.7876 -0.1996 2.1674 7 7 3.0357 -1.0724 3.0760 8 7 2.4587 -2.1901 2.7925 9 7 1.7862 -1.9989 1.5725 10 6 1.0348 -2.9195 0.8785 11 1 0.5633 -2.6403 -0.0522 12 6 0.8878 -4.2108 1.3722 13 7 1.4612 -4.5502 2.5030 14 14 -0.1256 -5.4627 0.4263 15 1 0.4638 -5.6593 -0.9225 16 1 -0.1261 -6.7545 1.1587 17 1 -1.5198 -4.9698 0.2902 18 1 -0.3634 0.5138 0.8900 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 3.1300 1.4425 -0.0005 22 1 1.6767 1.9563 -0.8900 23 1 1.6767 1.9563 0.8900 24 1 1.6767 -1.7490 -1.2492 25 1 1.6767 -0.2075 -2.1392 26 1 3.1301 -0.7209 -1.2495 27 1 1.3583 -5.4510 2.8476 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000200239310.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:58 Heat of formation + Delta-G solvation = 88.841803 kcal Electronic energy + Delta-G solvation = -12789.063912 eV Core-core repulsion = 10583.912210 eV Total energy + Delta-G solvation = -2205.151702 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.102 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.03802 -36.34595 -34.41964 -31.59995 -29.58437 -26.85601 -26.76873 -26.04122 -22.26761 -21.40798 -18.72431 -17.99293 -15.56384 -14.69557 -14.68766 -14.41229 -13.55412 -13.34485 -12.22494 -11.91428 -11.82827 -11.71478 -11.53281 -11.50994 -11.15985 -10.84076 -10.72000 -10.49706 -10.32005 -10.31723 -9.77274 -8.93463 -8.86978 -8.25170 -6.94059 -4.78519 2.73044 2.88332 2.93990 3.17435 3.58538 4.05541 4.30973 4.68099 5.20070 5.41666 5.53084 5.89034 6.02188 6.05652 6.25770 6.28868 6.37747 6.39615 6.46167 6.64196 6.81532 6.82867 6.94076 7.24973 7.57338 7.78011 8.38382 8.90401 10.03568 10.54837 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.038249 B = 0.015439 C = 0.011892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.860438 B = 1813.121907 C = 2353.913498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.040 3.960 3 C -0.123 4.123 4 C -0.145 4.145 5 C 0.083 3.917 6 N -0.351 5.351 7 N -0.152 5.152 8 N -0.114 5.114 9 N -0.155 5.155 10 C -0.309 4.309 11 H 0.131 0.869 12 C 0.047 3.953 13 N -0.756 5.756 14 Si 0.940 3.060 15 H -0.261 1.261 16 H -0.272 1.272 17 H -0.261 1.261 18 H 0.053 0.947 19 H 0.056 0.944 20 H 0.067 0.933 21 H 0.058 0.942 22 H 0.050 0.950 23 H 0.058 0.942 24 H 0.067 0.933 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.393 2.197 -8.454 9.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.036 3.964 3 C -0.181 4.181 4 C -0.203 4.203 5 C -0.185 4.185 6 N -0.213 5.213 7 N -0.142 5.142 8 N -0.099 5.099 9 N 0.065 4.935 10 C -0.447 4.447 11 H 0.148 0.852 12 C -0.174 4.174 13 N -0.382 5.382 14 Si 0.762 3.238 15 H -0.186 1.186 16 H -0.197 1.197 17 H -0.186 1.186 18 H 0.072 0.928 19 H 0.075 0.925 20 H 0.086 0.914 21 H 0.078 0.922 22 H 0.069 0.931 23 H 0.078 0.922 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.545 2.037 -6.979 8.088 hybrid contribution -0.983 -0.955 -1.068 1.738 sum -4.528 1.082 -8.047 9.297 Atomic orbital electron populations 1.21950 0.94192 1.02951 1.01218 1.18592 0.94835 0.94306 0.88675 1.21638 1.01564 0.93907 1.00957 1.21950 1.01237 1.01324 0.95797 1.24372 1.07260 0.85450 1.01427 1.73709 1.18787 1.26791 1.01992 1.77596 1.19842 0.96711 1.20053 1.82991 1.13913 1.15829 0.97210 1.47466 1.25881 1.07089 1.13079 1.20269 1.27788 0.90550 1.06103 0.85204 1.25838 0.96858 0.98643 0.96087 1.70120 1.32100 1.20505 1.15486 0.85784 0.79823 0.78638 0.79544 1.18590 1.19671 1.18577 0.92800 0.92490 0.91378 0.92242 0.93083 0.92243 0.91383 0.92497 0.92796 0.90373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 8.34 37.16 0.31 -2.13 15 2 C 0.04 0.75 0.75 -155.66 -0.12 0.63 15 3 C -0.12 -2.04 7.98 37.16 0.30 -1.74 15 4 C -0.15 -2.44 8.33 37.16 0.31 -2.13 15 5 C 0.08 2.05 6.42 -154.74 -0.99 1.05 15 6 N -0.35 -9.47 11.48 32.84 0.38 -9.09 15 7 N -0.15 -4.44 13.38 60.35 0.81 -3.63 15 8 N -0.11 -3.43 11.90 60.35 0.72 -2.71 15 9 N -0.16 -4.19 3.77 -8.88 -0.03 -4.23 15 10 C -0.31 -7.59 8.60 -14.67 -0.13 -7.72 15 11 H 0.13 2.79 4.58 -52.49 -0.24 2.55 15 12 C 0.05 1.12 5.50 -17.51 -0.10 1.02 15 13 N -0.76 -19.94 11.93 55.50 0.66 -19.28 15 14 Si 0.94 17.37 29.55 -169.99 -5.02 12.35 15 15 H -0.26 -4.66 7.11 56.52 0.40 -4.26 15 16 H -0.27 -4.99 7.11 56.52 0.40 -4.59 15 17 H -0.26 -4.66 7.11 56.52 0.40 -4.25 15 18 H 0.05 0.93 8.14 -51.93 -0.42 0.51 15 19 H 0.06 0.76 8.14 -51.93 -0.42 0.34 15 20 H 0.07 1.20 5.74 -51.93 -0.30 0.91 15 21 H 0.06 1.02 8.14 -51.93 -0.42 0.60 15 22 H 0.05 0.67 8.14 -51.93 -0.42 0.25 15 23 H 0.06 1.02 8.14 -51.93 -0.42 0.60 15 24 H 0.07 1.20 5.74 -51.93 -0.30 0.90 15 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 15 26 H 0.05 0.93 8.14 -51.93 -0.42 0.51 15 27 H 0.29 6.81 8.30 -40.82 -0.34 6.47 15 LS Contribution 230.62 15.07 3.48 3.48 Total: -1.00 -30.88 230.62 -2.36 -33.24 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -2.93 Total: 0.88 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -0.42 Total: -11.01 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 2.53 Total: -38.94 kcal Atomic # 14 Polarization: 17.37 SS G_CDS: -5.02 Total: 12.35 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -30.88 -2.36 -33.24 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000200239310.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.086 kcal (2) G-P(sol) polarization free energy of solvation -30.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds