Wall clock time and date at job start Sun Mar 29 2020 21:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47474 * 270.00343 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.46817 * 179.97438 * 9 7 2 11 11 C 1.38258 * 119.95736 * 264.72470 * 10 9 7 12 12 C 1.38136 * 120.07805 * 179.76478 * 11 10 9 13 13 C 1.38774 * 119.99401 * 0.53480 * 12 11 10 14 14 O 1.35898 * 120.04074 * 179.69923 * 13 12 11 15 15 C 1.38663 * 119.91585 * 359.72059 * 13 12 11 16 16 C 1.38396 * 119.92070 * 359.97438 * 15 13 12 17 17 F 1.35101 * 119.99526 * 180.02562 * 16 15 13 18 18 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 19 19 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 20 20 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 21 21 H 1.07996 * 119.95767 * 0.02562 * 11 10 9 22 22 H 1.07995 * 119.99880 * 180.24906 * 12 11 10 23 23 H 0.96702 * 113.99485 * 270.02060 * 14 13 12 24 24 H 1.08004 * 120.04059 * 180.02562 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 2.2303 -3.6446 -0.0027 11 6 2.5952 -4.2398 -1.1960 12 6 3.4964 -5.2868 -1.2003 13 6 4.0280 -5.7494 -0.0049 14 8 4.9100 -6.7833 -0.0075 15 6 3.6578 -5.1557 1.1923 16 6 2.7595 -4.1029 1.1920 17 9 2.3982 -3.5230 2.3575 18 1 -0.4849 0.8400 0.0004 19 1 0.6240 -2.5575 0.8880 20 1 0.6247 -2.5562 -0.8920 21 1 2.1785 -3.8831 -2.1263 22 1 3.7836 -5.7481 -2.1336 23 1 4.4957 -7.6538 0.0681 24 1 4.0706 -5.5139 2.1238 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214256842.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:47 Heat of formation + Delta-G solvation = -98.356094 kcal Electronic energy + Delta-G solvation = -11754.193625 eV Core-core repulsion = 9352.878606 eV Total energy + Delta-G solvation = -2401.315019 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 196.064 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.77234 -40.50164 -37.79247 -35.25776 -32.52724 -31.50899 -28.49727 -25.20878 -23.78426 -22.32996 -19.59529 -18.60042 -17.68831 -17.21453 -16.90320 -16.47796 -16.15603 -15.39304 -14.64665 -14.49385 -14.43885 -13.76642 -13.33561 -12.87096 -12.77411 -12.44254 -12.38134 -11.65901 -11.60109 -11.50522 -10.63706 -9.83932 -9.33150 -8.23753 -6.37359 0.22042 0.25050 1.37700 1.39337 1.50686 2.36200 2.61505 3.06578 3.07950 3.67325 3.88540 4.11011 4.18466 4.45231 4.86745 4.97601 5.19402 5.26809 5.27580 5.37154 5.68579 5.73848 5.87897 6.11811 6.73629 6.88049 7.31100 8.85781 Molecular weight = 196.06amu Principal moments of inertia in cm(-1) A = 0.053792 B = 0.009486 C = 0.009200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.395636 B = 2950.984511 C = 3042.782915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.006 3.994 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.532 4.532 8 H 0.052 0.948 9 C 0.058 3.942 10 C -0.110 4.110 11 C -0.085 4.085 12 C -0.141 4.141 13 C 0.120 3.880 14 O -0.497 6.497 15 C -0.181 4.181 16 C 0.083 3.917 17 F -0.152 7.152 18 H 0.267 0.733 19 H -0.001 1.001 20 H 0.018 0.982 21 H 0.141 0.859 22 H 0.164 0.836 23 H 0.413 0.587 24 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.790 -11.561 -1.491 13.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.570 4.570 8 H 0.070 0.930 9 C 0.021 3.979 10 C -0.111 4.111 11 C -0.103 4.103 12 C -0.160 4.160 13 C 0.076 3.924 14 O -0.310 6.310 15 C -0.200 4.200 16 C 0.064 3.936 17 F -0.131 7.131 18 H 0.076 0.924 19 H 0.017 0.983 20 H 0.037 0.963 21 H 0.159 0.841 22 H 0.181 0.819 23 H 0.273 0.727 24 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 7.040 -11.006 -1.492 13.150 hybrid contribution -0.446 0.813 0.524 1.065 sum 6.594 -10.194 -0.968 12.179 Atomic orbital electron populations 1.70067 1.07610 1.28076 1.50999 1.25916 0.95822 1.03118 0.94393 0.85432 0.78438 0.78314 0.78810 1.19102 1.20344 1.19435 1.21330 0.92955 0.91290 1.51433 0.92996 1.18013 0.92787 0.90673 0.96393 1.20601 0.99909 0.97641 0.92966 1.20980 0.97211 0.95161 0.96918 1.21666 0.96925 0.98202 0.99170 1.17960 0.91504 0.92009 0.90973 1.84772 1.33150 1.17268 1.95812 1.21424 0.99614 0.98121 1.00866 1.17672 0.99325 0.95506 0.81123 1.91426 1.90762 1.84012 1.46864 0.92430 0.98264 0.96349 0.84104 0.81876 0.72729 0.82985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.53 13.29 21.45 0.28 -56.25 14 2 C 0.01 0.35 5.46 84.66 0.46 0.81 14 3 Si 0.97 45.05 29.54 68.60 2.03 47.08 14 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 14 5 H -0.28 -12.57 7.11 99.48 0.71 -11.87 14 6 H -0.27 -12.34 7.11 99.48 0.71 -11.63 14 7 C -0.53 -31.16 9.09 25.60 0.23 -30.92 14 8 H 0.05 3.01 7.74 -2.91 -0.02 2.99 14 9 C 0.06 3.18 4.87 29.10 0.14 3.32 14 10 C -0.11 -4.90 5.08 -19.80 -0.10 -5.00 14 11 C -0.08 -3.02 9.67 22.25 0.22 -2.80 14 12 C -0.14 -3.97 9.99 22.37 0.22 -3.75 14 13 C 0.12 3.37 6.70 22.50 0.15 3.52 14 14 O -0.50 -10.63 13.50 -92.40 -1.25 -11.88 14 15 C -0.18 -5.91 9.97 22.41 0.22 -5.68 14 16 C 0.08 3.47 7.24 22.36 0.16 3.63 14 17 F -0.15 -7.04 16.56 44.97 0.74 -6.29 14 18 H 0.27 15.18 8.31 -92.71 -0.77 14.41 14 19 H 0.00 -0.06 7.79 -2.39 -0.02 -0.07 14 20 H 0.02 1.02 8.05 -2.39 -0.02 1.00 14 21 H 0.14 4.69 8.06 -2.91 -0.02 4.67 14 22 H 0.16 3.39 8.06 -2.91 -0.02 3.36 14 23 H 0.41 4.19 9.06 -74.06 -0.67 3.52 14 24 H 0.15 4.21 8.06 -2.91 -0.02 4.19 14 Total: -1.00 -68.79 227.40 4.07 -64.72 By element: Atomic # 1 Polarization: -1.06 SS G_CDS: 0.55 Total: -0.51 kcal Atomic # 6 Polarization: -38.59 SS G_CDS: 1.71 Total: -36.88 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: 0.28 Total: -56.25 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: -1.25 Total: -11.88 kcal Atomic # 9 Polarization: -7.04 SS G_CDS: 0.74 Total: -6.29 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -68.79 4.07 -64.72 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214256842.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.632 kcal (2) G-P(sol) polarization free energy of solvation -68.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds