Wall clock time and date at job start Sun Mar 29 2020 21:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.27554 * 119.41288 * 2 1 4 4 N 1.39821 * 121.43932 * 180.13101 * 3 2 1 5 5 C 1.46500 * 119.81285 * 199.28573 * 4 3 2 6 6 C 1.50700 * 109.47060 * 270.00648 * 5 4 3 7 7 H 1.07996 * 120.00406 * 359.97438 * 6 5 4 8 8 C 1.37884 * 119.99830 * 179.97438 * 6 5 4 9 9 N 1.31508 * 120.00333 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 119.99799 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.47344 * 89.99908 * 10 8 6 12 12 H 1.48499 * 109.47334 * 209.99856 * 10 8 6 13 13 H 1.48503 * 109.47499 * 329.99767 * 10 8 6 14 14 C 1.34795 * 120.37681 * 19.27259 * 4 3 2 15 15 O 1.21304 * 120.23235 * 179.51787 * 14 4 3 16 16 C 1.50825 * 119.53790 * 359.53711 * 14 4 3 17 17 C 1.50519 * 119.41051 * 179.73144 * 2 1 3 18 18 H 1.09002 * 109.47152 * 359.97438 * 1 2 3 19 19 H 1.09001 * 109.46980 * 240.00031 * 1 2 3 20 20 H 1.09004 * 109.47113 * 120.00012 * 1 2 3 21 21 H 1.09006 * 109.46940 * 30.00268 * 5 4 3 22 22 H 1.08989 * 109.47376 * 150.00483 * 5 4 3 23 23 H 0.96997 * 120.00490 * 179.97438 * 9 8 6 24 24 H 1.08994 * 109.54319 * 87.04575 * 16 14 4 25 25 H 1.09001 * 109.54223 * 207.30094 * 16 14 4 26 26 H 1.09001 * 109.44395 * 265.86169 * 17 2 1 27 27 H 1.08998 * 109.44591 * 25.77263 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1334 1.1111 0.0000 4 7 3.5308 1.1606 -0.0027 5 6 4.2171 2.3849 0.4171 6 6 4.4330 3.2752 -0.7794 7 1 4.0934 2.9605 -1.7551 8 6 5.0642 4.4918 -0.6286 9 7 5.2531 5.2686 -1.6727 10 14 5.6522 5.0359 1.0589 11 1 7.0449 4.5674 1.2727 12 1 5.6101 6.5179 1.1437 13 1 4.7690 4.4552 2.1020 14 6 4.2500 0.0881 -0.3892 15 8 5.4621 0.1367 -0.3989 16 6 3.5373 -1.1728 -0.8099 17 6 2.2462 -1.3112 0.0061 18 1 -0.3633 1.0277 0.0005 19 1 -0.3633 -0.5138 0.8900 20 1 -0.3633 -0.5139 -0.8900 21 1 3.6080 2.9083 1.1542 22 1 5.1804 2.1285 0.8578 23 1 5.6967 6.1246 -1.5665 24 1 3.2975 -1.1191 -1.8718 25 1 4.1789 -2.0340 -0.6230 26 1 2.4890 -1.5860 1.0326 27 1 1.6181 -2.0839 -0.4371 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216578092.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:16 Heat of formation + Delta-G solvation = 0.750716 kcal Electronic energy + Delta-G solvation = -12333.597527 eV Core-core repulsion = 10092.333158 eV Total energy + Delta-G solvation = -2241.264369 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.91381 -36.92336 -34.23642 -32.32817 -31.54947 -29.19613 -26.89759 -24.62640 -22.35549 -21.13424 -17.18057 -16.92922 -16.61678 -15.90388 -15.33748 -14.15642 -13.78201 -13.61045 -13.42152 -12.74847 -12.46214 -12.21519 -12.09798 -11.77865 -11.67236 -11.21620 -10.69900 -10.57713 -10.11919 -9.99710 -9.50299 -8.90195 -8.57704 -7.72468 -6.06811 -4.05496 2.10729 3.08217 3.31259 3.34713 3.37630 3.38781 4.38603 4.40662 4.71621 4.81952 5.15146 5.26169 5.33341 5.57458 5.61625 5.64881 5.71671 5.90250 6.22722 6.57150 6.75719 7.03961 7.16471 7.56753 8.38177 8.55367 8.86882 8.97160 9.51183 11.06767 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.045384 B = 0.011022 C = 0.010044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.816136 B = 2539.729090 C = 2787.179361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.068 3.932 3 N -0.226 5.226 4 N -0.436 5.436 5 C 0.235 3.765 6 C -0.525 4.525 7 H 0.075 0.925 8 C 0.073 3.927 9 N -0.897 5.897 10 Si 0.876 3.124 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.265 1.265 14 C 0.486 3.514 15 O -0.523 6.523 16 C -0.144 4.144 17 C -0.114 4.114 18 H 0.078 0.922 19 H 0.077 0.923 20 H 0.076 0.924 21 H 0.041 0.959 22 H 0.044 0.956 23 H 0.265 0.735 24 H 0.099 0.901 25 H 0.104 0.896 26 H 0.086 0.914 27 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.244 -12.542 4.837 16.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 N -0.033 5.033 4 N -0.255 5.255 5 C 0.115 3.885 6 C -0.564 4.564 7 H 0.093 0.907 8 C -0.129 4.129 9 N -0.535 5.535 10 Si 0.702 3.298 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.190 1.190 14 C 0.273 3.727 15 O -0.397 6.397 16 C -0.185 4.185 17 C -0.154 4.154 18 H 0.097 0.903 19 H 0.095 0.905 20 H 0.095 0.905 21 H 0.059 0.941 22 H 0.062 0.938 23 H 0.075 0.925 24 H 0.117 0.883 25 H 0.123 0.877 26 H 0.104 0.896 27 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.412 -11.338 4.784 14.907 hybrid contribution 0.619 -0.362 0.582 0.923 sum -7.794 -11.700 5.366 15.047 Atomic orbital electron populations 1.20568 0.87581 1.04108 1.02514 1.24778 0.97529 0.90686 0.99598 1.73777 0.93491 1.25532 1.10457 1.49153 0.99672 1.14609 1.62024 1.19737 0.91662 0.80135 0.96921 1.21228 1.38616 1.01793 0.94765 0.90706 1.24814 0.95160 0.96092 0.96856 1.69884 1.42788 1.11344 1.29483 0.86857 0.79954 0.78181 0.84792 1.19826 1.20797 1.18977 1.21011 0.88170 0.85259 0.78277 1.90708 1.13538 1.83239 1.52175 1.21874 0.97219 0.97201 1.02195 1.21098 0.95788 0.96868 1.01688 0.90343 0.90468 0.90534 0.94119 0.93798 0.92479 0.88290 0.87731 0.89579 0.88908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.87 10.17 36.01 0.37 -0.50 15 2 C 0.07 0.98 6.86 -79.18 -0.54 0.43 15 3 N -0.23 -4.51 11.20 35.29 0.40 -4.11 15 4 N -0.44 -10.16 3.44 -61.42 -0.21 -10.37 15 5 C 0.23 6.20 4.52 -5.19 -0.02 6.18 15 6 C -0.53 -16.02 9.94 -34.44 -0.34 -16.36 15 7 H 0.07 2.52 8.06 -52.49 -0.42 2.09 15 8 C 0.07 2.21 5.47 -17.82 -0.10 2.12 15 9 N -0.90 -28.46 13.96 55.43 0.77 -27.68 15 10 Si 0.88 22.11 27.47 -169.99 -4.67 17.44 15 11 H -0.27 -6.83 7.11 56.52 0.40 -6.43 15 12 H -0.28 -6.94 7.11 56.52 0.40 -6.54 15 13 H -0.27 -6.35 6.54 56.52 0.37 -5.98 15 14 C 0.49 10.63 7.55 -10.92 -0.08 10.54 15 15 O -0.52 -13.42 16.70 5.54 0.09 -13.33 15 16 C -0.14 -2.14 6.24 -27.63 -0.17 -2.31 15 17 C -0.11 -1.33 6.04 -27.78 -0.17 -1.50 15 18 H 0.08 0.85 8.09 -51.93 -0.42 0.43 15 19 H 0.08 0.57 8.14 -51.93 -0.42 0.15 15 20 H 0.08 0.59 8.14 -51.93 -0.42 0.17 15 21 H 0.04 1.05 7.20 -51.93 -0.37 0.67 15 22 H 0.04 1.19 6.85 -51.94 -0.36 0.83 15 23 H 0.27 7.80 8.31 -40.82 -0.34 7.47 15 24 H 0.10 1.38 8.14 -51.93 -0.42 0.95 15 25 H 0.10 1.32 8.14 -51.93 -0.42 0.90 15 26 H 0.09 0.94 8.14 -51.93 -0.42 0.51 15 27 H 0.09 0.74 8.08 -51.93 -0.42 0.32 15 LS Contribution 237.61 15.07 3.58 3.58 Total: -1.00 -35.95 237.61 -4.37 -40.32 By element: Atomic # 1 Polarization: -1.18 SS G_CDS: -3.27 Total: -4.45 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -1.06 Total: -1.40 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.96 Total: -42.17 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.09 Total: -13.33 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -35.95 -4.37 -40.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216578092.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.075 kcal (2) G-P(sol) polarization free energy of solvation -35.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds