Wall clock time and date at job start Sun Mar 29 2020 21:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86799 * 120.00061 * 2 1 4 4 H 1.48502 * 109.47000 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.46878 * 120.00079 * 3 2 1 6 6 H 1.48493 * 109.47343 * 240.00422 * 3 2 1 7 7 C 1.38805 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00373 * 165.24349 * 7 2 1 9 9 N 1.36943 * 120.00143 * 345.24291 * 7 2 1 10 10 C 1.47949 * 122.26488 * 333.91252 * 9 7 2 11 11 C 1.52700 * 110.99060 * 231.67361 * 10 9 7 12 12 C 1.53827 * 111.68899 * 311.59591 * 11 10 9 13 13 C 1.51546 * 107.20504 * 57.54678 * 12 11 10 14 14 H 1.08997 * 110.18197 * 54.30161 * 13 12 11 15 15 C 1.53010 * 116.91314 * 181.13254 * 13 12 11 16 16 C 1.55466 * 102.74463 * 157.85185 * 15 13 12 17 17 C 1.55053 * 106.32529 * 335.96638 * 16 15 13 18 18 C 1.45293 * 122.26796 * 153.62546 * 9 7 2 19 19 H 1.09002 * 109.70009 * 238.26291 * 18 9 7 20 20 H 0.97001 * 119.99557 * 359.97438 * 1 2 3 21 21 H 1.09003 * 109.17815 * 352.06054 * 10 9 7 22 22 H 1.09005 * 109.17671 * 111.27968 * 10 9 7 23 23 H 1.09002 * 109.04090 * 72.16559 * 11 10 9 24 24 H 1.09007 * 109.03873 * 191.10307 * 11 10 9 25 25 H 1.09002 * 109.91307 * 176.97159 * 12 11 10 26 26 H 1.09003 * 109.90883 * 298.04567 * 12 11 10 27 27 H 1.08997 * 110.75650 * 276.17159 * 15 13 12 28 28 H 1.09006 * 110.75526 * 39.35285 * 15 13 12 29 29 H 1.08999 * 110.07992 * 95.18436 * 16 15 13 30 30 H 1.08998 * 110.07953 * 216.74652 * 16 15 13 31 31 H 1.09008 * 110.29960 * 114.96521 * 17 16 15 32 32 H 1.08996 * 110.29955 * 237.01297 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7464 0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0636 -1.2175 -0.2388 9 7 1.3595 -2.3686 0.3010 10 6 0.1485 -2.4006 1.1503 11 6 0.3012 -3.4135 2.2828 12 6 0.8088 -4.7709 1.7669 13 6 2.1278 -4.5187 1.0647 14 1 2.8140 -3.9948 1.7301 15 6 2.8211 -5.7299 0.4373 16 6 3.7455 -5.0807 -0.6309 17 6 3.1118 -3.7094 -0.9803 18 6 1.8079 -3.6580 -0.1964 19 1 1.0100 -4.1277 -0.7716 20 1 -0.4849 0.8401 0.0004 21 1 -0.0170 -1.4106 1.5754 22 1 -0.7109 -2.6747 0.5383 23 1 1.0087 -3.0243 3.0150 24 1 -0.6661 -3.5566 2.7647 25 1 0.9582 -5.4536 2.6034 26 1 0.0890 -5.1944 1.0664 27 1 3.4087 -6.2671 1.1817 28 1 2.0927 -6.3930 -0.0296 29 1 4.7460 -4.9377 -0.2228 30 1 3.7897 -5.7101 -1.5197 31 1 3.7722 -2.8984 -0.6733 32 1 2.9098 -3.6477 -2.0496 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227167126.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:25:47 Heat of formation + Delta-G solvation = -12.955162 kcal Electronic energy + Delta-G solvation = -13073.627909 eV Core-core repulsion = 11033.028214 eV Total energy + Delta-G solvation = -2040.599695 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.39617 -36.24406 -34.60137 -32.49970 -29.45081 -28.36703 -26.99239 -23.68448 -22.08204 -21.07281 -20.71637 -18.13353 -17.13901 -16.14708 -15.81927 -15.41064 -14.89748 -14.66733 -14.24810 -13.99492 -13.50182 -13.02400 -12.83808 -12.55251 -12.32100 -12.03162 -11.98772 -11.78346 -11.55857 -11.46190 -11.23958 -11.06825 -10.84040 -10.50668 -8.60435 -7.84031 -5.29104 1.44701 1.47362 1.53921 2.51287 3.28979 3.49239 3.92187 3.97866 4.05064 4.30008 4.49114 4.55805 4.66462 4.68987 4.78045 4.85087 4.89713 5.08030 5.09286 5.20015 5.23596 5.30085 5.39948 5.45869 5.52795 5.63614 5.66602 5.71759 5.80303 6.39872 7.14828 7.88847 8.47235 9.22241 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.041757 B = 0.013568 C = 0.011061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.381286 B = 2063.174705 C = 2530.743402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.058 4.058 3 Si 0.967 3.033 4 H -0.294 1.294 5 H -0.279 1.279 6 H -0.275 1.275 7 C -0.250 4.250 8 H 0.071 0.929 9 N -0.602 5.602 10 C 0.171 3.829 11 C -0.131 4.131 12 C -0.093 4.093 13 C -0.112 4.112 14 H 0.054 0.946 15 C -0.106 4.106 16 C -0.110 4.110 17 C -0.118 4.118 18 C 0.155 3.845 19 H 0.011 0.989 20 H 0.248 0.752 21 H 0.054 0.946 22 H -0.011 1.011 23 H 0.046 0.954 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.055 0.945 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.052 0.948 32 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.897 -10.216 2.186 11.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.252 4.252 3 Si 0.795 3.205 4 H -0.220 1.220 5 H -0.205 1.205 6 H -0.201 1.201 7 C -0.380 4.380 8 H 0.088 0.912 9 N -0.324 5.324 10 C 0.046 3.954 11 C -0.170 4.170 12 C -0.130 4.130 13 C -0.133 4.133 14 H 0.072 0.928 15 C -0.144 4.144 16 C -0.148 4.148 17 C -0.156 4.156 18 C 0.048 3.952 19 H 0.029 0.971 20 H 0.057 0.943 21 H 0.072 0.928 22 H 0.007 0.993 23 H 0.065 0.935 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.074 0.926 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.809 -10.042 2.161 11.342 hybrid contribution -0.096 1.431 -0.186 1.447 sum 4.713 -8.610 1.974 10.013 Atomic orbital electron populations 1.70171 1.06650 1.25643 1.56340 1.25806 0.96120 1.01432 1.01838 0.85343 0.77526 0.79326 0.78315 1.22048 1.20476 1.20084 1.19406 0.92360 0.85413 1.40792 0.91175 1.44102 1.31174 1.02214 1.54925 1.20675 0.86774 0.97698 0.90287 1.22024 1.00523 0.96335 0.98130 1.21224 0.96065 0.95947 0.99803 1.22280 0.96359 0.97188 0.97453 0.92775 1.22095 0.98336 0.96072 0.97869 1.22466 0.98746 0.94274 0.99268 1.21914 0.96459 0.98442 0.98748 1.21131 0.94202 0.86343 0.93519 0.97097 0.94287 0.92761 0.99256 0.93538 0.91347 0.90496 0.92600 0.90126 0.90976 0.91110 0.90377 0.92884 0.93043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.61 11.04 21.65 0.24 -57.37 16 2 C -0.06 -3.32 5.05 84.86 0.43 -2.90 16 3 Si 0.97 46.19 29.58 68.60 2.03 48.22 16 4 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 7 C -0.25 -14.17 9.29 84.03 0.78 -13.39 16 8 H 0.07 3.86 6.30 -2.91 -0.02 3.84 16 9 N -0.60 -31.64 2.94 -673.33 -1.98 -33.62 16 10 C 0.17 8.71 5.31 86.00 0.46 9.17 16 11 C -0.13 -5.15 5.95 30.77 0.18 -4.97 16 12 C -0.09 -3.09 5.70 30.40 0.17 -2.92 16 13 C -0.11 -3.96 2.45 -10.23 -0.03 -3.98 16 14 H 0.05 2.09 8.13 -2.39 -0.02 2.07 16 15 C -0.11 -2.84 6.50 31.45 0.20 -2.64 16 16 C -0.11 -3.02 6.88 32.15 0.22 -2.80 16 17 C -0.12 -4.43 6.12 31.04 0.19 -4.24 16 18 C 0.15 6.70 2.92 46.00 0.13 6.84 16 19 H 0.01 0.52 8.01 -2.39 -0.02 0.50 16 20 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 21 H 0.05 3.11 6.05 -2.39 -0.01 3.10 16 22 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 23 H 0.05 1.84 8.14 -2.39 -0.02 1.83 16 24 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 25 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.06 1.84 8.01 -2.39 -0.02 1.82 16 27 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 29 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.05 2.18 6.40 -2.38 -0.02 2.16 16 32 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -64.13 245.54 4.10 -60.03 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: 1.07 Total: 4.56 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: 2.75 Total: -21.83 kcal Atomic # 7 Polarization: -89.25 SS G_CDS: -1.74 Total: -90.99 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -64.13 4.10 -60.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227167126.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.075 kcal (2) G-P(sol) polarization free energy of solvation -64.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds