Wall clock time and date at job start Sun Mar 29 2020 21:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38318 * 119.97753 * 2 1 4 4 C 1.38275 * 120.15828 * 180.02562 * 3 2 1 5 5 C 1.38160 * 120.11117 * 0.25761 * 4 3 2 6 6 C 1.38794 * 119.95354 * 359.43111 * 5 4 3 7 7 O 1.35789 * 120.07733 * 180.29709 * 6 5 4 8 8 C 1.34820 * 116.99760 * 354.39810 * 7 6 5 9 9 H 1.07996 * 120.00324 * 5.06469 * 8 7 6 10 10 C 1.38648 * 119.99665 * 185.06576 * 8 7 6 11 11 N 1.31571 * 119.99884 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00012 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.46934 * 59.99763 * 12 10 8 14 14 H 1.48500 * 109.47065 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.46890 * 299.99553 * 12 10 8 16 16 C 1.38261 * 119.97925 * 179.97438 * 2 1 3 17 17 F 1.35098 * 120.05694 * 0.02562 * 16 2 1 18 18 H 1.08995 * 109.47354 * 89.99426 * 1 2 3 19 19 H 1.08995 * 109.47406 * 209.99813 * 1 2 3 20 20 H 1.09008 * 109.46945 * 329.99794 * 1 2 3 21 21 H 1.08003 * 119.92501 * 0.02562 * 3 2 1 22 22 H 1.08001 * 119.94329 * 179.97438 * 4 3 2 23 23 H 1.07997 * 120.02475 * 179.71958 * 5 4 3 24 24 H 0.97007 * 119.99601 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1981 0.0000 4 6 3.5809 1.2025 -0.0005 5 6 4.2777 0.0095 -0.0064 6 6 3.5890 -1.1954 0.0001 7 8 4.2714 -2.3694 0.0004 8 6 5.6120 -2.2980 -0.1231 9 1 6.1029 -1.3361 -0.1341 10 6 6.3606 -3.4596 -0.2359 11 7 5.7626 -4.6315 -0.2220 12 14 8.2181 -3.3608 -0.4077 13 1 8.7896 -2.6797 0.7817 14 1 8.7792 -4.7318 -0.5111 15 1 8.5618 -2.5923 -1.6310 16 6 2.1979 -1.1976 0.0005 17 9 1.5231 -2.3680 0.0005 18 1 -0.3634 0.0001 -1.0276 19 1 -0.3634 -0.8899 0.5138 20 1 -0.3633 0.8900 0.5139 21 1 1.6565 2.1326 0.0004 22 1 4.1170 2.1400 -0.0010 23 1 5.3577 0.0146 -0.0114 24 1 6.2864 -5.4442 -0.3006 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227296344.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:54 Heat of formation + Delta-G solvation = -56.211585 kcal Electronic energy + Delta-G solvation = -11899.335141 eV Core-core repulsion = 9499.847645 eV Total energy + Delta-G solvation = -2399.487496 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 196.064 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -47.79484 -38.89558 -36.69644 -32.45288 -31.64546 -28.93635 -26.46922 -25.22240 -21.63483 -21.05767 -17.79704 -17.26959 -16.05847 -15.37668 -14.93869 -14.54783 -13.88655 -13.44445 -13.18919 -12.90294 -12.80502 -12.35583 -11.88377 -11.52720 -11.16709 -11.03353 -10.70457 -10.68607 -10.42332 -9.52111 -8.89564 -7.94346 -7.28410 -6.49871 -4.09454 1.93859 2.17752 3.10002 3.11685 3.14708 3.90543 4.35672 4.87554 5.04360 5.26529 5.41174 5.64377 5.79110 5.91073 5.92328 6.07631 6.17775 6.57350 6.83855 6.94601 7.04322 7.20559 7.26819 7.72088 7.91557 8.93483 9.58622 10.67070 Molecular weight = 196.06amu Principal moments of inertia in cm(-1) A = 0.058078 B = 0.010506 C = 0.008948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.998148 B = 2664.519832 C = 3128.278238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.081 4.081 3 C -0.192 4.192 4 C -0.079 4.079 5 C -0.220 4.220 6 C 0.124 3.876 7 O -0.166 6.166 8 C -0.396 4.396 9 H 0.094 0.906 10 C 0.041 3.959 11 N -0.856 5.856 12 Si 0.944 3.056 13 H -0.269 1.269 14 H -0.277 1.277 15 H -0.269 1.269 16 C 0.018 3.982 17 F -0.143 7.143 18 H 0.067 0.933 19 H 0.065 0.935 20 H 0.065 0.935 21 H 0.115 0.885 22 H 0.114 0.886 23 H 0.135 0.865 24 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.440 8.425 0.055 9.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.082 4.082 3 C -0.211 4.211 4 C -0.097 4.097 5 C -0.239 4.239 6 C 0.069 3.931 7 O -0.069 6.069 8 C -0.472 4.472 9 H 0.112 0.888 10 C -0.165 4.165 11 N -0.490 5.490 12 Si 0.769 3.231 13 H -0.194 1.194 14 H -0.202 1.202 15 H -0.194 1.194 16 C -0.002 4.002 17 F -0.122 7.122 18 H 0.086 0.914 19 H 0.084 0.916 20 H 0.084 0.916 21 H 0.133 0.867 22 H 0.132 0.868 23 H 0.152 0.848 24 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.464 7.858 0.060 8.587 hybrid contribution 0.918 -0.112 -0.087 0.929 sum -2.546 7.746 -0.027 8.154 Atomic orbital electron populations 1.20632 0.91155 1.02454 1.02071 1.19476 0.95758 0.91507 1.01495 1.20336 0.93903 0.95920 1.10951 1.20787 0.93880 0.97036 0.98002 1.21021 1.00812 0.91157 1.10959 1.19351 0.90175 0.87949 0.95587 1.84033 1.21170 1.23987 1.77664 1.21339 0.78329 0.94887 1.52625 0.88840 1.25351 1.00726 0.94112 0.96285 1.70060 1.36622 0.97558 1.44735 0.85732 0.80125 0.78023 0.79260 1.19383 1.20169 1.19388 1.16707 0.87102 0.81272 1.15164 1.91392 1.79818 1.46170 1.94806 0.91438 0.91635 0.91620 0.86742 0.86811 0.84780 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 9.83 36.01 0.35 -1.22 14 2 C -0.08 -1.54 5.88 -104.58 -0.62 -2.16 14 3 C -0.19 -3.31 9.70 -39.54 -0.38 -3.70 14 4 C -0.08 -1.42 10.04 -39.60 -0.40 -1.81 14 5 C -0.22 -4.77 9.17 -39.40 -0.36 -5.13 14 6 C 0.12 3.14 6.65 -39.05 -0.26 2.88 14 7 O -0.17 -4.90 9.62 -0.05 0.00 -4.90 14 8 C -0.40 -11.16 9.49 30.88 0.29 -10.87 14 9 H 0.09 2.39 5.21 -52.49 -0.27 2.11 14 10 C 0.04 1.12 5.49 -17.51 -0.10 1.03 14 11 N -0.86 -25.41 13.67 55.48 0.76 -24.65 14 12 Si 0.94 20.39 29.55 -169.99 -5.02 15.37 14 13 H -0.27 -5.59 7.11 56.52 0.40 -5.19 14 14 H -0.28 -5.84 7.11 56.52 0.40 -5.44 14 15 H -0.27 -5.60 7.11 56.52 0.40 -5.20 14 16 C 0.02 0.41 7.25 -39.25 -0.28 0.13 14 17 F -0.14 -3.47 16.32 2.25 0.04 -3.43 14 18 H 0.07 0.91 8.14 -51.93 -0.42 0.49 14 19 H 0.06 0.98 7.64 -51.93 -0.40 0.59 14 20 H 0.06 0.80 8.09 -51.92 -0.42 0.38 14 21 H 0.11 1.60 8.06 -52.48 -0.42 1.17 14 22 H 0.11 1.66 8.06 -52.49 -0.42 1.23 14 23 H 0.13 2.84 5.64 -52.49 -0.30 2.54 14 24 H 0.27 7.38 8.31 -40.82 -0.34 7.04 14 LS Contribution 223.13 15.07 3.36 3.36 Total: -1.00 -30.97 223.13 -4.41 -35.38 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -1.79 Total: -0.26 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: -1.75 Total: -20.86 kcal Atomic # 7 Polarization: -25.41 SS G_CDS: 0.76 Total: -24.65 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: 0.00 Total: -4.90 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.04 Total: -3.43 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -30.97 -4.41 -35.38 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227296344.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.832 kcal (2) G-P(sol) polarization free energy of solvation -30.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds