Wall clock time and date at job start Sun Mar 29 2020 22:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37097 * 120.00254 * 2 1 4 4 H 1.07993 * 119.99773 * 215.74697 * 3 2 1 5 5 C 1.38947 * 120.00060 * 35.74581 * 3 2 1 6 6 N 1.31414 * 119.99797 * 204.00524 * 5 3 2 7 7 Si 1.86798 * 120.00002 * 23.99786 * 5 3 2 8 8 H 1.48503 * 109.47400 * 264.37507 * 7 5 3 9 9 H 1.48498 * 109.47299 * 24.37912 * 7 5 3 10 10 H 1.48501 * 109.46945 * 144.37575 * 7 5 3 11 11 C 1.34777 * 119.99696 * 179.97438 * 2 1 3 12 12 O 1.21287 * 120.00009 * 180.02562 * 11 2 1 13 13 C 1.50704 * 120.00228 * 0.02562 * 11 2 1 14 14 H 1.08998 * 115.54781 * 325.72322 * 13 11 2 15 15 C 1.52994 * 117.49947 * 111.38925 * 13 11 2 16 16 C 1.52994 * 117.50229 * 180.02562 * 13 11 2 17 17 C 1.53005 * 117.49461 * 359.97438 * 16 13 11 18 18 C 1.52996 * 117.50090 * 145.01796 * 16 13 11 19 19 H 1.09005 * 109.46668 * 95.53192 * 1 2 3 20 20 H 1.08997 * 109.47249 * 215.53239 * 1 2 3 21 21 H 1.09002 * 109.46807 * 335.54156 * 1 2 3 22 22 H 0.97002 * 119.99570 * 180.02562 * 6 5 3 23 23 H 1.09001 * 117.50193 * 214.98234 * 15 13 11 24 24 H 1.09002 * 117.49955 * 0.02562 * 15 13 11 25 25 H 1.08996 * 109.47208 * 60.00319 * 17 16 13 26 26 H 1.09009 * 109.46856 * 180.02562 * 17 16 13 27 27 H 1.08995 * 109.47544 * 299.99704 * 17 16 13 28 28 H 1.09004 * 109.47183 * 60.00594 * 18 16 13 29 29 H 1.09003 * 109.47449 * 180.02562 * 18 16 13 30 30 H 1.09000 * 109.47576 * 300.00655 * 18 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1506 1.1873 0.0000 4 1 3.0779 1.2753 -0.5464 5 6 1.6522 2.2773 0.7030 6 7 1.9979 3.4967 0.3559 7 14 0.4907 2.0093 2.1412 8 1 -0.9132 2.1358 1.6739 9 1 0.7047 0.6519 2.7040 10 1 0.7573 3.0273 3.1890 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1673 0.0010 13 6 1.3854 -2.4724 0.0005 14 1 0.4464 -2.4730 0.5540 15 6 1.4612 -3.3319 -1.2629 16 6 2.2073 -3.7627 0.0017 17 6 3.7315 -3.6293 0.0022 18 6 1.6485 -4.9556 0.7799 19 1 -0.3633 -0.0991 -1.0230 20 1 -0.3633 -0.8363 0.5972 21 1 -0.3633 0.9355 0.4255 22 1 1.6503 4.2576 0.8469 23 1 0.5723 -3.8984 -1.5404 24 1 2.0565 -2.9537 -2.0940 25 1 4.0483 -3.0852 0.8920 26 1 4.1831 -4.6215 0.0027 27 1 4.0491 -3.0865 -0.8879 28 1 0.6771 -5.2334 0.3708 29 1 2.3338 -5.7989 0.6939 30 1 1.5365 -4.6845 1.8297 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228662782.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:02 Heat of formation + Delta-G solvation = -0.225646 kcal Electronic energy + Delta-G solvation = -12909.981238 eV Core-core repulsion = 10706.788963 eV Total energy + Delta-G solvation = -2203.192275 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.37729 -36.76515 -34.57744 -32.00985 -29.13914 -27.09580 -26.47225 -25.34561 -22.60037 -19.47772 -17.87918 -17.03076 -16.27395 -15.52048 -14.39895 -13.93127 -13.69655 -13.41845 -12.99412 -12.59448 -12.34436 -12.21504 -12.12169 -11.78564 -11.52753 -11.18839 -10.85198 -10.76410 -10.36122 -9.94084 -9.68602 -9.32320 -9.00950 -8.25491 -7.69420 -6.38667 -3.91287 3.03991 3.22702 3.29342 3.53727 4.15604 4.26040 4.45949 4.97762 5.06371 5.22050 5.31825 5.41440 5.68457 5.85793 5.87422 5.93645 6.02252 6.12674 6.19282 6.32060 6.34120 6.38800 6.44059 6.59007 7.01386 7.57771 8.32171 8.56473 9.01438 9.36413 9.85780 10.73740 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.053228 B = 0.011070 C = 0.010369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.917211 B = 2528.663947 C = 2699.730028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.468 5.468 3 C -0.316 4.316 4 H 0.105 0.895 5 C 0.058 3.942 6 N -0.863 5.863 7 Si 0.878 3.122 8 H -0.276 1.276 9 H -0.265 1.265 10 H -0.288 1.288 11 C 0.490 3.510 12 O -0.561 6.561 13 C -0.175 4.175 14 H 0.110 0.890 15 C -0.154 4.154 16 C -0.104 4.104 17 C -0.097 4.097 18 C -0.112 4.112 19 H 0.050 0.950 20 H 0.053 0.947 21 H 0.064 0.936 22 H 0.273 0.727 23 H 0.093 0.907 24 H 0.095 0.905 25 H 0.067 0.933 26 H 0.038 0.962 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.342 -12.208 0.362 13.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.190 5.190 3 C -0.443 4.443 4 H 0.123 0.877 5 C -0.147 4.147 6 N -0.499 5.499 7 Si 0.705 3.295 8 H -0.203 1.203 9 H -0.189 1.189 10 H -0.215 1.215 11 C 0.279 3.721 12 O -0.443 6.443 13 C -0.196 4.196 14 H 0.128 0.872 15 C -0.192 4.192 16 C -0.104 4.104 17 C -0.154 4.154 18 C -0.169 4.169 19 H 0.069 0.931 20 H 0.072 0.928 21 H 0.083 0.917 22 H 0.084 0.916 23 H 0.112 0.888 24 H 0.114 0.886 25 H 0.086 0.914 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.733 -11.958 0.391 12.866 hybrid contribution -0.945 0.214 0.822 1.271 sum -5.678 -11.744 1.213 13.101 Atomic orbital electron populations 1.21973 0.83473 1.01345 1.00916 1.43647 1.04025 1.05598 1.65698 1.19050 1.09192 0.85082 1.30969 0.87728 1.25348 0.97428 0.94737 0.97230 1.69793 1.44004 0.97958 1.38175 0.86967 0.80109 0.78945 0.83465 1.20322 1.18920 1.21451 1.19355 0.87533 0.83651 0.81576 1.90537 1.13633 1.86610 1.53480 1.22480 1.01544 0.91991 1.03633 0.87189 1.23128 1.02285 1.02273 0.91523 1.21496 0.95455 0.93906 0.99577 1.21283 0.90767 0.99142 1.04165 1.21355 1.00098 0.95902 0.99594 0.93101 0.92829 0.91722 0.91646 0.88850 0.88624 0.91368 0.94341 0.91629 0.92726 0.92125 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.37 8.80 59.85 0.53 1.89 16 2 N -0.47 -11.78 2.60 -122.19 -0.32 -12.10 16 3 C -0.32 -9.21 9.38 -14.93 -0.14 -9.35 16 4 H 0.11 3.41 7.87 -52.49 -0.41 3.00 16 5 C 0.06 1.64 5.25 -17.47 -0.09 1.55 16 6 N -0.86 -25.37 13.96 55.50 0.77 -24.60 16 7 Si 0.88 20.96 25.08 -169.99 -4.26 16.70 16 8 H -0.28 -6.10 6.66 56.52 0.38 -5.73 16 9 H -0.26 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 C 0.49 11.77 7.39 -10.98 -0.08 11.69 16 12 O -0.56 -15.15 12.95 5.55 0.07 -15.07 16 13 C -0.18 -3.20 5.02 -91.78 -0.46 -3.66 16 14 H 0.11 1.80 6.52 -51.93 -0.34 1.46 16 15 C -0.15 -2.38 9.53 -26.72 -0.25 -2.63 16 16 C -0.10 -1.66 2.70 -154.50 -0.42 -2.08 16 17 C -0.10 -1.67 8.09 37.16 0.30 -1.37 16 18 C -0.11 -1.39 9.85 37.16 0.37 -1.03 16 19 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 20 H 0.05 0.93 6.24 -51.93 -0.32 0.60 16 21 H 0.06 1.39 3.45 -51.93 -0.18 1.21 16 22 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 23 H 0.09 1.17 8.05 -51.93 -0.42 0.75 16 24 H 0.10 1.57 8.05 -51.93 -0.42 1.15 16 25 H 0.07 1.33 7.26 -51.93 -0.38 0.95 16 26 H 0.04 0.55 7.93 -51.92 -0.41 0.14 16 27 H 0.06 1.26 7.01 -51.93 -0.36 0.89 16 28 H 0.05 0.59 7.90 -51.93 -0.41 0.18 16 29 H 0.06 0.66 7.92 -51.93 -0.41 0.25 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 244.27 15.07 3.68 3.68 Total: -1.00 -31.68 244.27 -4.38 -36.05 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -4.07 Total: 0.32 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -0.25 Total: -4.98 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.46 Total: -36.69 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: 0.07 Total: -15.07 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.26 Total: 16.70 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -31.68 -4.38 -36.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228662782.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.826 kcal (2) G-P(sol) polarization free energy of solvation -31.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds