Wall clock time and date at job start Sun Mar 29 2020 22:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.52992 * 109.47482 * 180.02562 * 3 2 1 5 5 H 1.09008 * 115.55106 * 29.27978 * 4 3 2 6 6 C 1.52999 * 117.50435 * 243.61100 * 4 3 2 7 7 C 1.52999 * 60.00136 * 252.50766 * 6 4 3 8 8 H 1.09005 * 117.50234 * 107.48551 * 7 6 4 9 9 N 1.46503 * 117.49848 * 252.50739 * 7 6 4 10 10 C 1.34777 * 120.00114 * 223.62039 * 9 7 6 11 11 O 1.21685 * 119.99673 * 359.97438 * 10 9 7 12 12 C 1.46367 * 119.99997 * 180.02562 * 10 9 7 13 13 H 1.08000 * 120.00260 * 359.97438 * 12 10 9 14 14 C 1.40052 * 120.00051 * 180.02562 * 12 10 9 15 15 N 1.30672 * 119.99938 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 120.00141 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.46993 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47327 * 119.99700 * 16 14 12 19 19 H 1.48502 * 109.47135 * 240.00017 * 16 14 12 20 20 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 21 21 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 23 23 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 24 24 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 25 25 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 26 26 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 27 27 H 1.09006 * 117.49528 * 359.97438 * 6 4 3 28 28 H 1.08997 * 117.50317 * 145.01705 * 6 4 3 29 29 H 0.96998 * 119.99551 * 43.61974 * 9 7 6 30 30 H 0.97000 * 119.99609 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 4.0399 0.5849 -0.4820 6 6 4.2769 2.0456 1.2148 7 6 4.2763 2.7946 -0.1193 8 1 3.6510 3.6840 -0.1970 9 7 5.5328 2.8376 -0.8715 10 6 5.9380 3.9899 -1.4412 11 8 5.2600 4.9943 -1.3312 12 6 7.1931 4.0327 -2.1932 13 1 7.7946 3.1411 -2.2911 14 6 7.6144 5.2302 -2.7847 15 7 6.8869 6.3091 -2.6658 16 14 9.2165 5.2851 -3.7438 17 1 9.8483 3.9411 -3.7295 18 1 8.9404 5.6879 -5.1462 19 1 10.1349 6.2698 -3.1175 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8934 -0.5139 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.6766 1.9563 -0.8900 26 1 1.6767 1.9564 0.8899 27 1 3.6520 2.4427 2.0148 28 1 5.2121 1.5850 1.5329 29 1 6.0730 2.0368 -0.9595 30 1 7.1790 7.1385 -3.0752 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228998626.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:48 Heat of formation + Delta-G solvation = -39.488418 kcal Electronic energy + Delta-G solvation = -12052.148492 eV Core-core repulsion = 9847.253656 eV Total energy + Delta-G solvation = -2204.894837 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.21176 -36.34890 -33.94684 -32.49181 -31.05838 -27.14245 -26.08639 -21.87515 -21.46526 -20.18096 -19.45626 -17.14638 -15.53734 -15.24113 -14.90781 -14.33648 -13.65488 -13.14885 -12.78675 -12.67480 -12.33663 -11.95813 -11.63178 -11.19692 -11.10482 -11.04681 -10.82093 -10.68736 -10.48992 -10.21443 -10.02932 -9.48643 -8.85341 -7.63426 -7.32084 -6.20001 -4.65642 3.12929 3.21001 3.25651 4.08861 4.27337 4.60260 4.65339 5.04825 5.12627 5.19691 5.44132 5.47555 5.62527 5.73149 5.85187 5.90460 5.96457 6.04766 6.09549 6.20323 6.35260 6.38752 6.59520 6.70565 7.42563 7.90702 8.10402 8.32928 9.01146 9.51452 10.58659 10.76735 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.074027 B = 0.006331 C = 0.006291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.148517 B = 4421.852039 C = 4449.702694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.085 4.085 4 C -0.178 4.178 5 H 0.098 0.902 6 C -0.206 4.206 7 C 0.117 3.883 8 H 0.125 0.875 9 N -0.736 5.736 10 C 0.555 3.445 11 O -0.579 6.579 12 C -0.545 4.545 13 H 0.069 0.931 14 C 0.087 3.913 15 N -0.767 5.767 16 Si 0.909 3.091 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.276 1.276 20 H 0.053 0.947 21 H 0.050 0.950 22 H 0.052 0.948 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.381 0.619 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.870 -10.105 3.839 12.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.123 4.123 4 C -0.198 4.198 5 H 0.116 0.884 6 C -0.246 4.246 7 C 0.009 3.991 8 H 0.143 0.857 9 N -0.388 5.388 10 C 0.360 3.640 11 O -0.462 6.462 12 C -0.582 4.582 13 H 0.087 0.913 14 C -0.133 4.133 15 N -0.396 5.396 16 Si 0.734 3.266 17 H -0.188 1.188 18 H -0.201 1.201 19 H -0.201 1.201 20 H 0.072 0.928 21 H 0.069 0.931 22 H 0.071 0.929 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.213 0.787 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.371 -9.123 3.847 11.774 hybrid contribution 1.085 -0.484 -0.409 1.257 sum -5.286 -9.607 3.437 11.491 Atomic orbital electron populations 1.21788 0.96276 1.01184 1.01774 1.21504 0.95285 0.97198 1.01804 1.21142 0.92859 0.96385 1.01895 1.22819 0.94540 0.99129 1.03291 0.88403 1.23559 1.02022 1.06231 0.92778 1.21347 0.90045 0.94628 0.93087 0.85710 1.45686 1.21808 1.13691 1.57574 1.18267 0.86510 0.80675 0.78573 1.90588 1.57751 1.33828 1.64041 1.20915 1.05752 0.96793 1.34697 0.91316 1.25716 0.97588 0.94972 0.94979 1.70033 1.35161 1.00099 1.34281 0.86299 0.81893 0.79016 0.79439 1.18768 1.20119 1.20129 0.92751 0.93104 0.92891 0.92188 0.92161 0.91707 0.92066 0.89255 0.89435 0.78694 0.92108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.91 37.16 0.37 -1.12 16 2 C -0.12 -1.35 5.89 -26.73 -0.16 -1.50 16 3 C -0.09 -1.14 5.49 -26.74 -0.15 -1.29 16 4 C -0.18 -2.77 5.66 -90.62 -0.51 -3.28 16 5 H 0.10 1.47 8.08 -51.92 -0.42 1.05 16 6 C -0.21 -3.33 10.10 -26.73 -0.27 -3.60 16 7 C 0.12 2.36 6.15 -67.93 -0.42 1.94 16 8 H 0.13 2.80 7.40 -51.93 -0.38 2.42 16 9 N -0.74 -17.07 5.56 -55.21 -0.31 -17.37 16 10 C 0.56 16.13 7.75 -12.99 -0.10 16.03 16 11 O -0.58 -19.07 14.59 5.20 0.08 -18.99 16 12 C -0.54 -15.59 9.54 -35.63 -0.34 -15.93 16 13 H 0.07 1.80 7.85 -52.49 -0.41 1.39 16 14 C 0.09 2.46 5.50 -17.37 -0.10 2.36 16 15 N -0.77 -23.20 11.83 55.55 0.66 -22.55 16 16 Si 0.91 20.22 29.56 -169.99 -5.02 15.20 16 17 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 18 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 19 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 20 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 21 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.79 7.88 -51.93 -0.41 0.38 16 27 H 0.09 1.32 8.03 -51.93 -0.42 0.90 16 28 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 29 H 0.38 7.80 8.81 -40.82 -0.36 7.44 16 30 H 0.27 7.31 8.29 -40.82 -0.34 6.97 16 LS Contribution 262.18 15.07 3.95 3.95 Total: -1.00 -33.15 262.18 -6.81 -39.96 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -4.49 Total: 6.18 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -1.67 Total: -6.38 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.35 Total: -39.92 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: 0.08 Total: -18.99 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -33.15 -6.81 -39.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228998626.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.476 kcal (2) G-P(sol) polarization free energy of solvation -33.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds