Wall clock time and date at job start Sun Mar 29 2020 22:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86801 * 119.99791 * 2 1 4 4 H 1.48493 * 109.47433 * 274.98578 * 3 2 1 5 5 H 1.48500 * 109.47192 * 34.98895 * 3 2 1 6 6 H 1.48508 * 109.46705 * 154.98442 * 3 2 1 7 7 C 1.40045 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00089 * 186.14717 * 7 2 1 9 9 C 1.46378 * 119.99804 * 6.14730 * 7 2 1 10 10 O 1.21689 * 120.00565 * 353.94021 * 9 7 2 11 11 N 1.34783 * 119.99766 * 173.94284 * 9 7 2 12 12 C 1.46498 * 119.99949 * 180.02562 * 11 9 7 13 13 C 1.52997 * 109.47027 * 180.02562 * 12 11 9 14 14 C 1.53007 * 109.47147 * 179.97438 * 13 12 11 15 15 C 1.53777 * 113.61385 * 274.13308 * 14 13 12 16 16 C 1.53948 * 87.01915 * 220.04729 * 15 14 13 17 17 C 1.53777 * 87.11442 * 25.36064 * 16 15 14 18 18 H 0.97001 * 120.00206 * 359.97438 * 1 2 3 19 19 H 0.96999 * 119.99758 * 359.97438 * 11 9 7 20 20 H 1.09002 * 109.46895 * 299.99322 * 12 11 9 21 21 H 1.09000 * 109.47316 * 59.99279 * 12 11 9 22 22 H 1.09002 * 109.47080 * 299.99087 * 13 12 11 23 23 H 1.08990 * 109.47687 * 59.99597 * 13 12 11 24 24 H 1.09003 * 112.84865 * 45.32806 * 14 13 12 25 25 H 1.09003 * 113.61576 * 334.56882 * 15 14 13 26 26 H 1.09001 * 113.61059 * 105.46625 * 15 14 13 27 27 H 1.09001 * 113.53614 * 270.80827 * 16 15 14 28 28 H 1.09008 * 113.66891 * 139.93231 * 16 15 14 29 29 H 1.08993 * 113.61970 * 220.08828 * 17 16 15 30 30 H 1.09007 * 113.68837 * 89.19872 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3828 2.1073 -1.3947 5 1 1.4948 2.6200 0.8028 6 1 3.5870 1.4120 0.5921 7 6 2.0070 -1.2128 -0.0005 8 1 3.0823 -1.2156 0.0996 9 6 1.2814 -2.4768 -0.1369 10 8 0.0645 -2.4827 -0.1388 11 7 1.9611 -3.6341 -0.2602 12 6 1.2349 -4.8990 -0.3972 13 6 2.2350 -6.0506 -0.5188 14 6 1.4766 -7.3718 -0.6612 15 6 1.0809 -8.0030 0.6840 16 6 1.4540 -9.3621 0.0645 17 6 2.3928 -8.5880 -0.8758 18 1 -0.4850 0.8400 0.0004 19 1 2.9311 -3.6293 -0.2590 20 1 0.6073 -5.0546 0.4804 21 1 0.6098 -4.8644 -1.2894 22 1 2.8629 -5.8953 -1.3961 23 1 2.8597 -6.0851 0.3737 24 1 0.6545 -7.3132 -1.3746 25 1 1.7265 -7.7083 1.5114 26 1 0.0207 -7.9048 0.9174 27 1 0.6249 -9.8484 -0.4495 28 1 1.9761 -10.0278 0.7519 29 1 2.3903 -8.9614 -1.8998 30 1 3.3983 -8.4530 -0.4770 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229110581.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:19 Heat of formation + Delta-G solvation = -64.759132 kcal Electronic energy + Delta-G solvation = -12115.283320 eV Core-core repulsion = 9909.292663 eV Total energy + Delta-G solvation = -2205.990657 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.00363 -39.15411 -35.58426 -34.51550 -31.62192 -28.47809 -26.49589 -25.59840 -22.67982 -21.74915 -20.20193 -19.17841 -17.45787 -16.57331 -16.33200 -15.98952 -15.80028 -15.13963 -14.42865 -14.25533 -13.42999 -13.27103 -13.17635 -13.04737 -12.75712 -12.61852 -12.24981 -12.01835 -11.94569 -11.41951 -11.03557 -10.99041 -10.93259 -9.87554 -9.49132 -8.30793 -6.86737 1.40357 1.41970 1.58228 2.25129 2.46093 3.12924 3.59564 3.71120 3.78716 3.92258 4.01817 4.27861 4.45827 4.60779 4.69764 4.88409 4.91629 4.93499 5.07357 5.11798 5.19861 5.24859 5.31467 5.46337 5.66455 5.87165 6.24184 6.27603 6.85565 7.55369 8.48013 8.66371 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.099263 B = 0.006125 C = 0.005908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 282.010993 B = 4570.155183 C = 4738.428448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.027 3.973 3 Si 1.002 2.998 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.247 1.247 7 C -0.576 4.576 8 H 0.089 0.911 9 C 0.533 3.467 10 O -0.636 6.636 11 N -0.757 5.757 12 C 0.135 3.865 13 C -0.102 4.102 14 C -0.115 4.115 15 C -0.146 4.146 16 C -0.134 4.134 17 C -0.127 4.127 18 H 0.275 0.725 19 H 0.396 0.604 20 H 0.027 0.973 21 H 0.025 0.975 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.056 0.944 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.747 -12.737 -0.753 14.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.188 4.188 3 Si 0.821 3.179 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.170 1.170 7 C -0.613 4.613 8 H 0.108 0.892 9 C 0.337 3.663 10 O -0.524 6.524 11 N -0.412 5.412 12 C 0.011 3.989 13 C -0.139 4.139 14 C -0.134 4.134 15 C -0.183 4.183 16 C -0.172 4.172 17 C -0.165 4.165 18 H 0.085 0.915 19 H 0.230 0.770 20 H 0.045 0.955 21 H 0.044 0.956 22 H 0.094 0.906 23 H 0.093 0.907 24 H 0.101 0.899 25 H 0.099 0.901 26 H 0.075 0.925 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.700 -12.696 -0.749 14.375 hybrid contribution 0.172 0.798 0.012 0.816 sum 6.872 -11.899 -0.737 13.760 Atomic orbital electron populations 1.70204 1.09710 1.29026 1.36439 1.27042 0.95520 1.05145 0.91083 0.84951 0.78894 0.74843 0.79219 1.18711 1.19690 1.16994 1.21469 0.95307 0.90292 1.54190 0.89246 1.18715 0.86831 0.84536 0.76234 1.90541 1.16375 1.87715 1.57802 1.45855 1.09373 1.05789 1.80135 1.20967 0.95198 0.84374 0.98394 1.21667 0.97101 0.92358 1.02813 1.22532 0.99137 0.93189 0.98566 1.23073 1.01123 0.97330 0.96808 1.22814 0.99714 0.95744 0.98901 1.22908 0.98262 0.94866 1.00420 0.91516 0.77030 0.95503 0.95633 0.90639 0.90668 0.89936 0.90107 0.92511 0.89815 0.90413 0.90763 0.89330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.75 11.85 21.83 0.26 -51.49 16 2 C 0.03 1.53 5.49 85.30 0.47 2.00 16 3 Si 1.00 41.48 29.56 68.60 2.03 43.51 16 4 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 6 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 7 C -0.58 -33.56 9.53 24.83 0.24 -33.32 16 8 H 0.09 4.64 7.85 -2.91 -0.02 4.61 16 9 C 0.53 32.29 7.74 86.36 0.67 32.96 16 10 O -0.64 -44.62 15.05 -4.31 -0.06 -44.68 16 11 N -0.76 -35.62 5.55 -467.40 -2.59 -38.22 16 12 C 0.14 5.51 5.67 86.38 0.49 6.00 16 13 C -0.10 -2.85 5.15 30.60 0.16 -2.69 16 14 C -0.12 -2.76 3.64 -10.27 -0.04 -2.79 16 15 C -0.15 -3.28 7.65 31.18 0.24 -3.05 16 16 C -0.13 -2.35 8.09 31.18 0.25 -2.10 16 17 C -0.13 -2.31 7.65 31.12 0.24 -2.07 16 18 H 0.27 15.54 8.29 -92.71 -0.77 14.77 16 19 H 0.40 15.78 8.45 -92.71 -0.78 15.00 16 20 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 21 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 22 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 23 H 0.07 1.95 7.87 -2.39 -0.02 1.93 16 24 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.08 1.80 7.92 -2.39 -0.02 1.79 16 26 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 29 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.09 1.47 8.10 -2.38 -0.02 1.45 16 Total: -1.00 -76.23 257.56 2.67 -73.56 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: 0.33 Total: 22.38 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: 2.71 Total: -5.06 kcal Atomic # 7 Polarization: -87.38 SS G_CDS: -2.34 Total: -89.71 kcal Atomic # 8 Polarization: -44.62 SS G_CDS: -0.06 Total: -44.68 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -76.23 2.67 -73.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229110581.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.800 kcal (2) G-P(sol) polarization free energy of solvation -76.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds