Wall clock time and date at job start Sun Mar 29 2020 21:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.28708 * 125.86725 * 2 1 4 4 N 1.28638 * 110.17863 * 180.23903 * 3 2 1 5 5 C 1.33769 * 108.88108 * 359.75841 * 4 3 2 6 6 C 1.35311 * 125.86722 * 179.82451 * 2 1 3 7 7 C 1.50703 * 126.91295 * 0.03595 * 6 2 1 8 8 N 1.46906 * 109.47109 * 274.71002 * 7 6 2 9 9 C 1.46895 * 110.99789 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.47030 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99961 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00406 * 180.02562 * 10 9 8 13 13 N 1.31511 * 120.00167 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 119.99519 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.46874 * 90.00738 * 14 12 10 16 16 H 1.48504 * 109.47006 * 210.00015 * 14 12 10 17 17 H 1.48493 * 109.47447 * 330.00142 * 14 12 10 18 18 H 1.09005 * 109.47096 * 270.17263 * 1 2 3 19 19 H 1.08998 * 109.47305 * 30.17385 * 1 2 3 20 20 H 1.08992 * 109.47318 * 150.17797 * 1 2 3 21 21 H 1.08002 * 126.74936 * 179.97438 * 5 4 3 22 22 H 1.08992 * 109.46894 * 154.70737 * 7 6 2 23 23 H 1.09004 * 109.47113 * 34.70888 * 7 6 2 24 24 H 1.00899 * 110.99484 * 303.95639 * 8 7 6 25 25 H 1.08996 * 109.47424 * 299.99656 * 9 8 7 26 26 H 1.09002 * 109.47411 * 60.00282 * 9 8 7 27 27 H 0.97000 * 119.99828 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2192 1.0430 0.0000 4 7 3.4576 0.6952 -0.0050 5 6 3.5321 -0.6404 -0.0032 6 6 2.2578 -1.0965 0.0034 7 6 1.8117 -2.5360 0.0070 8 7 1.5574 -2.9663 1.3884 9 6 1.1190 -4.3677 1.4309 10 6 0.8690 -4.7727 2.8608 11 1 1.0203 -4.0601 3.6582 12 6 0.4472 -6.0528 3.1512 13 7 0.2286 -6.4060 4.3990 14 14 0.1850 -7.2851 1.7720 15 1 1.4483 -8.0246 1.5221 16 1 -0.8810 -8.2433 2.1604 17 1 -0.2208 -6.5671 0.5371 18 1 -0.3633 0.0031 1.0277 19 1 -0.3634 0.8884 -0.5165 20 1 -0.3633 -0.8915 -0.5110 21 1 4.4321 -1.2374 -0.0067 22 1 2.5918 -3.1592 -0.4299 23 1 0.8975 -2.6345 -0.5784 24 1 2.3716 -2.8240 1.9671 25 1 0.1999 -4.4785 0.8556 26 1 1.8941 -5.0041 1.0037 27 1 -0.0685 -7.3065 4.6032 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229601779.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:49 Heat of formation + Delta-G solvation = 73.939250 kcal Electronic energy + Delta-G solvation = -11937.505066 eV Core-core repulsion = 9731.707141 eV Total energy + Delta-G solvation = -2205.797925 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.102 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.21867 -37.43180 -35.52683 -34.65528 -32.55131 -29.52959 -28.70571 -26.05291 -23.52476 -23.08071 -21.73461 -19.04476 -18.15318 -17.57484 -16.78466 -16.13910 -15.45935 -15.27980 -15.18447 -14.43276 -14.11340 -13.76395 -13.64750 -13.16778 -12.83851 -12.62791 -12.32673 -11.82665 -11.77804 -11.49090 -11.02034 -10.80019 -10.22831 -9.22773 -8.27727 -6.33354 0.57863 1.39869 1.41529 1.51955 1.52721 1.57288 2.36955 3.07260 3.37263 3.55110 3.78255 4.03061 4.12433 4.30360 4.56129 4.57952 4.68934 4.79409 4.95584 5.08973 5.21929 5.53213 5.64279 5.89832 6.48098 6.58519 6.75951 7.31770 7.48514 8.89203 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.063795 B = 0.007451 C = 0.007413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.803508 B = 3756.843258 C = 3776.212306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.275 5.275 3 N -0.119 5.119 4 N -0.306 5.306 5 C -0.055 4.055 6 C -0.003 4.003 7 C 0.130 3.870 8 N -0.687 5.687 9 C 0.176 3.824 10 C -0.530 4.530 11 H 0.032 0.968 12 C 0.006 3.994 13 N -0.951 5.951 14 Si 0.955 3.045 15 H -0.268 1.268 16 H -0.287 1.287 17 H -0.240 1.240 18 H 0.094 0.906 19 H 0.118 0.882 20 H 0.117 0.883 21 H 0.211 0.789 22 H 0.074 0.926 23 H 0.097 0.903 24 H 0.338 0.662 25 H 0.037 0.963 26 H -0.004 1.004 27 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.514 6.616 -13.056 14.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.070 5.070 3 N -0.098 5.098 4 N -0.171 5.171 5 C -0.214 4.214 6 C -0.137 4.137 7 C -0.001 4.001 8 N -0.318 5.318 9 C 0.048 3.952 10 C -0.568 4.568 11 H 0.051 0.949 12 C -0.192 4.192 13 N -0.591 5.591 14 Si 0.778 3.222 15 H -0.193 1.193 16 H -0.213 1.213 17 H -0.163 1.163 18 H 0.113 0.887 19 H 0.137 0.863 20 H 0.135 0.865 21 H 0.228 0.772 22 H 0.092 0.908 23 H 0.115 0.885 24 H 0.156 0.844 25 H 0.055 0.945 26 H 0.014 0.986 27 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.194 8.318 -12.954 15.396 hybrid contribution 0.520 -2.169 0.091 2.232 sum 0.327 6.149 -12.863 14.261 Atomic orbital electron populations 1.22596 0.70607 1.07257 1.06133 1.47462 1.10676 1.03963 1.44885 1.78169 0.96923 1.12894 1.21858 1.74987 1.10237 1.13820 1.18034 1.23856 0.98415 0.91505 1.07670 1.22368 0.91065 0.92179 1.08123 1.20428 1.01992 0.85955 0.91695 1.60428 1.40106 1.22765 1.08512 1.19786 0.95324 0.84938 0.95179 1.21337 1.45337 0.97179 0.92969 0.94945 1.25932 0.94489 1.00518 0.98223 1.70068 1.48051 1.20386 1.20638 0.85611 0.78392 0.78380 0.79859 1.19265 1.21290 1.16289 0.88722 0.86336 0.86497 0.77211 0.90764 0.88517 0.84434 0.94520 0.98623 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.35 11.22 127.77 1.43 2.78 15 2 N -0.28 -7.45 3.74 -355.72 -1.33 -8.78 15 3 N -0.12 -3.82 13.16 37.02 0.49 -3.33 15 4 N -0.31 -10.12 12.41 -58.26 -0.72 -10.85 15 5 C -0.06 -1.54 11.99 83.73 1.00 -0.54 15 6 C 0.00 -0.09 6.51 41.36 0.27 0.18 15 7 C 0.13 3.39 5.91 85.56 0.51 3.89 15 8 N -0.69 -24.47 6.48 -521.98 -3.38 -27.85 15 9 C 0.18 7.44 4.51 85.56 0.39 7.83 15 10 C -0.53 -29.10 9.87 25.60 0.25 -28.85 15 11 H 0.03 2.02 8.06 -2.91 -0.02 2.00 15 12 C 0.01 0.32 5.47 84.65 0.46 0.78 15 13 N -0.95 -58.07 13.96 21.45 0.30 -57.77 15 14 Si 0.95 41.23 27.47 68.60 1.88 43.11 15 15 H -0.27 -11.12 7.11 99.48 0.71 -10.41 15 16 H -0.29 -12.39 7.11 99.48 0.71 -11.69 15 17 H -0.24 -9.22 6.54 99.48 0.65 -8.57 15 18 H 0.09 1.81 8.14 -2.38 -0.02 1.79 15 19 H 0.12 1.59 8.14 -2.39 -0.02 1.58 15 20 H 0.12 1.71 7.22 -2.39 -0.02 1.69 15 21 H 0.21 4.45 8.06 -2.91 -0.02 4.43 15 22 H 0.07 1.70 8.14 -2.39 -0.02 1.68 15 23 H 0.10 2.21 7.31 -2.38 -0.02 2.19 15 24 H 0.34 12.47 8.72 -89.69 -0.78 11.69 15 25 H 0.04 1.51 7.20 -2.39 -0.02 1.49 15 26 H 0.00 -0.16 7.57 -2.39 -0.02 -0.18 15 27 H 0.27 15.18 8.31 -92.71 -0.77 14.41 15 Total: -1.00 -69.17 240.31 1.89 -67.29 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.34 Total: 12.09 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: 4.31 Total: -13.92 kcal Atomic # 7 Polarization: -103.93 SS G_CDS: -4.65 Total: -108.57 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 1.88 Total: 43.11 kcal Total: -69.17 1.89 -67.29 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229601779.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.227 kcal (2) G-P(sol) polarization free energy of solvation -69.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds