Wall clock time and date at job start Sun Mar 29 2020 21:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 C 1.50696 * 109.47391 * 239.99666 * 2 1 3 5 5 H 1.07997 * 120.00579 * 240.00382 * 4 2 1 6 6 C 1.37877 * 119.99887 * 59.99863 * 4 2 1 7 7 N 1.31517 * 120.00053 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00159 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47106 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47244 * 120.00229 * 8 6 4 11 11 H 1.48501 * 109.47100 * 240.00286 * 8 6 4 12 12 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 13 13 C 1.46901 * 110.99793 * 275.00325 * 12 2 1 14 14 C 1.50701 * 109.46921 * 179.97438 * 13 12 2 15 15 C 1.35448 * 126.77479 * 89.70898 * 14 13 12 16 16 C 1.41380 * 103.98449 * 179.91002 * 15 14 13 17 17 N 1.30166 * 106.39631 * 0.35466 * 16 15 14 18 18 O 1.20925 * 111.60592 * 359.77405 * 17 16 15 19 19 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 20 20 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 22 22 H 0.97002 * 119.99751 * 180.02562 * 7 6 4 23 23 H 1.00899 * 110.99995 * 151.04723 * 12 2 1 24 24 H 1.09002 * 109.47401 * 59.99808 * 13 12 2 25 25 H 1.09001 * 109.46874 * 299.99821 * 13 12 2 26 26 H 1.08011 * 128.00968 * 0.02562 * 15 14 13 27 27 H 1.08007 * 126.79909 * 180.09753 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 3.1465 -2.2871 -3.6037 10 1 1.1661 -1.5868 -4.8160 11 1 3.1466 -0.1875 -4.8164 12 7 2.0196 -0.6925 1.1995 13 6 2.0823 0.2227 2.3469 14 6 2.5872 -0.5217 3.5561 15 6 3.8784 -0.6651 3.9393 16 6 3.8003 -1.4369 5.1213 17 7 2.5366 -1.6775 5.3202 18 8 1.8476 -1.1774 4.4614 19 1 -0.3633 0.5137 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 0.7089 1.1612 -3.4845 23 1 2.9173 -1.1205 1.0288 24 1 1.0869 0.6164 2.5525 25 1 2.7587 1.0463 2.1182 26 1 4.7628 -0.2778 3.4552 27 1 4.6259 -1.7657 5.7351 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231896881.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:14 Heat of formation + Delta-G solvation = 40.252718 kcal Electronic energy + Delta-G solvation = -12011.085738 eV Core-core repulsion = 9771.534304 eV Total energy + Delta-G solvation = -2239.551434 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -45.79914 -37.97189 -35.11899 -34.56608 -32.88788 -30.15824 -27.43683 -26.13127 -24.33457 -22.29962 -21.75729 -18.97234 -18.43700 -17.85388 -16.84230 -16.09507 -15.70287 -15.35170 -14.94611 -14.30203 -14.06680 -13.59344 -13.03396 -12.73943 -12.67151 -12.44032 -12.20723 -12.10296 -11.95411 -11.39707 -10.90903 -10.58488 -10.37477 -9.14832 -8.12765 -6.26326 0.50862 1.40560 1.43240 1.46187 1.56945 2.16874 2.43544 3.16783 3.51810 3.57568 3.85684 4.19493 4.29139 4.53301 4.73800 4.79427 4.89740 5.10603 5.19642 5.21240 5.45705 5.66922 5.85293 6.22866 6.40075 6.70131 6.95612 7.30355 7.43964 8.93012 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.067296 B = 0.007583 C = 0.007150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.973735 B = 3691.426401 C = 3915.010054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.217 3.783 3 H -0.015 1.015 4 C -0.537 4.537 5 H 0.059 0.941 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.961 3.039 9 H -0.267 1.267 10 H -0.283 1.283 11 H -0.280 1.280 12 N -0.687 5.687 13 C 0.136 3.864 14 C -0.017 4.017 15 C -0.232 4.232 16 C -0.001 4.001 17 N -0.402 5.402 18 O 0.073 5.927 19 H 0.059 0.941 20 H 0.025 0.975 21 H 0.027 0.973 22 H 0.263 0.737 23 H 0.338 0.662 24 H 0.086 0.914 25 H 0.073 0.927 26 H 0.196 0.804 27 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.123 -0.825 9.380 11.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.109 3.891 3 H 0.003 0.997 4 C -0.576 4.576 5 H 0.077 0.923 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.787 3.213 9 H -0.192 1.192 10 H -0.209 1.209 11 H -0.205 1.205 12 N -0.319 5.319 13 C 0.006 3.994 14 C -0.081 4.081 15 C -0.254 4.254 16 C -0.180 4.180 17 N -0.109 5.109 18 O 0.012 5.988 19 H 0.078 0.922 20 H 0.044 0.956 21 H 0.046 0.954 22 H 0.072 0.928 23 H 0.156 0.844 24 H 0.104 0.896 25 H 0.091 0.909 26 H 0.213 0.787 27 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 4.703 -1.616 10.341 11.475 hybrid contribution 1.430 0.564 -1.571 2.198 sum 6.132 -1.052 8.771 10.753 Atomic orbital electron populations 1.21597 0.97719 0.98941 0.99430 1.18956 0.92747 0.91389 0.86032 0.99724 1.21577 1.31766 1.12738 0.91487 0.92256 1.25678 0.95143 0.95643 1.01906 1.70015 1.37334 1.23959 1.24179 0.85458 0.78051 0.78620 0.79173 1.19162 1.20865 1.20545 1.60651 1.32935 1.33200 1.05134 1.20384 1.02022 0.92317 0.84690 1.24711 0.91456 0.97738 0.94191 1.22974 0.97923 1.05599 0.98867 1.25639 0.94890 0.99121 0.98304 1.73865 1.06940 1.18258 1.11882 1.84793 1.35412 1.50852 1.27763 0.92205 0.95589 0.95448 0.92782 0.84377 0.89550 0.90895 0.78724 0.75832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.76 9.19 71.98 0.66 -5.09 15 2 C 0.22 10.54 2.60 44.16 0.11 10.65 15 3 H -0.01 -0.77 7.80 -2.39 -0.02 -0.79 15 4 C -0.54 -28.53 8.59 25.60 0.22 -28.31 15 5 H 0.06 3.10 7.62 -2.91 -0.02 3.08 15 6 C 0.02 0.85 5.30 84.65 0.45 1.30 15 7 N -0.92 -51.17 11.32 21.45 0.24 -50.93 15 8 Si 0.96 42.38 29.54 68.60 2.03 44.41 15 9 H -0.27 -11.45 7.11 99.48 0.71 -10.74 15 10 H -0.28 -12.37 7.11 99.48 0.71 -11.67 15 11 H -0.28 -12.04 7.11 99.48 0.71 -11.33 15 12 N -0.69 -27.79 6.29 -499.45 -3.14 -30.93 15 13 C 0.14 4.46 6.05 85.56 0.52 4.97 15 14 C -0.02 -0.51 7.00 25.04 0.18 -0.33 15 15 C -0.23 -5.62 11.09 22.40 0.25 -5.37 15 16 C 0.00 -0.03 12.17 85.71 1.04 1.01 15 17 N -0.40 -12.42 12.07 -59.27 -0.72 -13.14 15 18 O 0.07 2.43 11.20 71.66 0.80 3.24 15 19 H 0.06 3.18 6.07 -2.39 -0.01 3.17 15 20 H 0.02 1.25 8.14 -2.39 -0.02 1.23 15 21 H 0.03 1.16 7.45 -2.39 -0.02 1.15 15 22 H 0.26 13.94 8.31 -92.71 -0.77 13.17 15 23 H 0.34 13.23 8.22 -89.69 -0.74 12.49 15 24 H 0.09 2.86 7.44 -2.39 -0.02 2.84 15 25 H 0.07 2.20 8.06 -2.39 -0.02 2.18 15 26 H 0.20 3.57 8.06 -2.90 -0.02 3.54 15 27 H 0.23 3.29 8.06 -2.91 -0.02 3.26 15 Total: -1.00 -60.00 238.95 3.08 -56.92 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: 0.44 Total: 11.59 kcal Atomic # 6 Polarization: -24.60 SS G_CDS: 3.43 Total: -21.17 kcal Atomic # 7 Polarization: -91.37 SS G_CDS: -3.61 Total: -94.99 kcal Atomic # 8 Polarization: 2.43 SS G_CDS: 0.80 Total: 3.24 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -60.00 3.08 -56.92 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231896881.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.175 kcal (2) G-P(sol) polarization free energy of solvation -60.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds