Wall clock time and date at job start Sun Mar 29 2020 22:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99887 * 2 1 4 4 H 1.48501 * 109.47189 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47143 * 299.99786 * 3 2 1 6 6 H 1.48503 * 109.47002 * 59.99778 * 3 2 1 7 7 C 1.37879 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99684 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00345 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47373 * 179.97438 * 9 7 2 11 11 C 1.34778 * 120.00000 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99842 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99651 * 180.02562 * 11 10 9 14 14 C 1.53003 * 109.46728 * 180.02562 * 13 11 10 15 15 C 1.53786 * 113.61503 * 85.86370 * 14 13 11 16 16 C 1.54049 * 86.98426 * 140.01654 * 15 14 13 17 17 C 1.53781 * 113.61337 * 183.47164 * 14 13 11 18 18 H 0.96997 * 119.99813 * 0.02562 * 1 2 3 19 19 H 1.09000 * 109.46992 * 59.99741 * 9 7 2 20 20 H 1.08994 * 109.46980 * 300.00309 * 9 7 2 21 21 H 0.97005 * 119.99820 * 0.02562 * 10 9 7 22 22 H 1.09000 * 109.47223 * 60.00290 * 13 11 10 23 23 H 1.08997 * 109.47305 * 299.99950 * 13 11 10 24 24 H 1.09002 * 112.85017 * 314.66753 * 14 13 11 25 25 H 1.08992 * 113.61675 * 254.61398 * 15 14 13 26 26 H 1.09000 * 113.60973 * 25.51686 * 15 14 13 27 27 H 1.09005 * 113.62125 * 220.02158 * 16 15 14 28 28 H 1.09003 * 113.61268 * 89.11946 * 16 15 14 29 29 H 1.08999 * 113.61567 * 334.48261 * 17 14 13 30 30 H 1.09000 * 113.61379 * 105.30384 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7538 -4.8834 0.0011 12 8 0.5615 -5.1050 0.0011 13 6 2.7332 -6.0288 0.0016 14 6 1.9682 -7.3538 0.0015 15 6 1.5727 -7.8367 -1.4040 16 6 1.9367 -9.2565 -0.9299 17 6 2.8781 -8.5905 0.0874 18 1 -0.4850 0.8400 -0.0004 19 1 0.6248 -2.5571 -0.8897 20 1 0.6241 -2.5567 0.8902 21 1 3.1568 -3.4354 0.0009 22 1 3.3598 -5.9707 0.8917 23 1 3.3599 -5.9714 -0.8883 24 1 1.1447 -7.3672 0.7156 25 1 0.5139 -7.7077 -1.6282 26 1 2.2226 -7.4602 -2.1939 27 1 2.4563 -9.8487 -1.6832 28 1 1.1046 -9.7902 -0.4705 29 1 3.8843 -8.4198 -0.2955 30 1 2.8736 -9.0688 1.0669 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232159779.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:21 Heat of formation + Delta-G solvation = -40.088949 kcal Electronic energy + Delta-G solvation = -12140.734166 eV Core-core repulsion = 9935.813288 eV Total energy + Delta-G solvation = -2204.920877 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.37581 -37.77190 -34.10848 -32.30541 -30.28200 -27.07218 -25.49433 -23.73179 -22.06157 -19.58943 -19.20955 -17.04561 -15.73774 -15.45322 -15.10861 -14.66518 -14.38216 -13.85315 -12.89519 -12.77813 -12.36380 -11.98443 -11.76663 -11.60434 -11.20245 -10.95029 -10.87848 -10.50940 -10.31086 -10.17404 -10.04853 -9.35731 -8.91978 -8.71850 -7.82663 -6.15325 -4.22040 3.24149 3.31114 3.34354 3.47424 4.14638 4.39026 4.74106 4.76951 4.87518 5.00495 5.20772 5.47513 5.58004 5.69113 5.78705 5.80619 5.92893 5.95801 6.05592 6.22950 6.40019 6.65596 7.34743 7.50122 7.55008 7.69965 7.99541 8.68845 8.81565 9.17892 9.45093 10.95058 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.098103 B = 0.006150 C = 0.005944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 285.345228 B = 4551.997157 C = 4709.728182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.248 3.752 10 N -0.716 5.716 11 C 0.496 3.504 12 O -0.557 6.557 13 C -0.133 4.133 14 C -0.091 4.091 15 C -0.134 4.134 16 C -0.143 4.143 17 C -0.139 4.139 18 H 0.265 0.735 19 H 0.025 0.975 20 H 0.026 0.974 21 H 0.390 0.610 22 H 0.087 0.913 23 H 0.086 0.914 24 H 0.098 0.902 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.339 -12.925 -0.754 14.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.081 0.919 9 C 0.127 3.873 10 N -0.365 5.365 11 C 0.281 3.719 12 O -0.436 6.436 13 C -0.173 4.173 14 C -0.110 4.110 15 C -0.171 4.171 16 C -0.180 4.180 17 C -0.177 4.177 18 H 0.075 0.925 19 H 0.043 0.957 20 H 0.044 0.956 21 H 0.222 0.778 22 H 0.105 0.895 23 H 0.104 0.896 24 H 0.116 0.884 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.307 -12.923 -0.755 14.400 hybrid contribution 0.881 1.138 -0.001 1.439 sum 7.188 -11.785 -0.756 13.824 Atomic orbital electron populations 1.69991 1.06124 1.27153 1.49108 1.24964 0.94910 0.99472 0.94736 0.86360 0.79825 0.82975 0.77745 1.19640 1.20796 1.20799 1.21284 0.93292 0.90520 1.52946 0.91878 1.19083 0.88406 0.82140 0.97632 1.46497 1.10987 1.06352 1.72630 1.20554 0.89640 0.84412 0.77248 1.90636 1.17085 1.84982 1.50937 1.21701 0.98350 0.93780 1.03514 1.22287 0.98305 0.91744 0.98664 1.22966 1.01996 0.95407 0.96752 1.22846 0.99539 0.96700 0.98946 1.22985 0.98214 0.97073 0.99395 0.92525 0.95654 0.95647 0.77799 0.89489 0.89580 0.88404 0.91233 0.90499 0.91850 0.90412 0.90285 0.91719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.54 -14.94 9.28 -34.44 -0.32 -15.26 16 8 H 0.06 1.63 7.60 -52.48 -0.40 1.23 16 9 C 0.25 6.73 5.43 -5.20 -0.03 6.70 16 10 N -0.72 -15.43 5.55 -61.48 -0.34 -15.77 16 11 C 0.50 10.08 7.83 -10.98 -0.09 9.99 16 12 O -0.56 -13.61 15.79 5.56 0.09 -13.52 16 13 C -0.13 -1.90 5.53 -27.88 -0.15 -2.06 16 14 C -0.09 -1.25 3.11 -89.80 -0.28 -1.53 16 15 C -0.13 -1.74 7.65 -25.77 -0.20 -1.94 16 16 C -0.14 -1.51 8.09 -25.78 -0.21 -1.71 16 17 C -0.14 -1.47 7.64 -25.92 -0.20 -1.66 16 18 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 19 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 20 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 21 H 0.39 7.17 8.32 -40.82 -0.34 6.83 16 22 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 23 H 0.09 1.07 7.87 -51.93 -0.41 0.66 16 24 H 0.10 1.52 7.73 -51.93 -0.40 1.12 16 25 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.08 0.95 7.92 -51.93 -0.41 0.54 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.75 8.10 -51.93 -0.42 0.32 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 258.33 15.07 3.89 3.89 Total: -1.00 -31.78 258.33 -6.69 -38.47 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -4.47 Total: 2.46 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -1.57 Total: -5.81 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 0.40 Total: -41.49 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.09 Total: -13.52 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.78 -6.69 -38.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232159779.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.617 kcal (2) G-P(sol) polarization free energy of solvation -31.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds