Wall clock time and date at job start Sun Mar 29 2020 22:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99849 * 2 1 4 4 H 1.48495 * 109.47286 * 270.00115 * 3 2 1 5 5 H 1.48506 * 109.46783 * 30.00151 * 3 2 1 6 6 H 1.48493 * 109.46796 * 149.99794 * 3 2 1 7 7 C 1.38808 * 120.00235 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00416 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99980 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00066 * 180.02562 * 9 7 2 11 11 H 1.09005 * 110.45628 * 327.60481 * 10 9 7 12 12 C 1.54507 * 110.62941 * 90.29376 * 10 9 7 13 13 C 1.54477 * 104.06510 * 118.69948 * 12 10 9 14 14 O 1.44688 * 104.83958 * 23.98057 * 13 12 10 15 15 C 1.44428 * 105.13885 * 319.51776 * 14 13 12 16 16 H 1.09002 * 110.37130 * 281.60836 * 15 14 13 17 17 C 1.53004 * 110.37485 * 159.38171 * 15 14 13 18 18 C 1.53000 * 117.49915 * 131.69697 * 17 15 14 19 19 C 1.53005 * 117.49690 * 63.03375 * 17 15 14 20 20 H 0.97000 * 120.00639 * 0.02562 * 1 2 3 21 21 H 0.97008 * 119.99857 * 0.02562 * 9 7 2 22 22 H 1.09000 * 110.50930 * 237.34887 * 12 10 9 23 23 H 1.09000 * 110.50918 * 359.91808 * 12 10 9 24 24 H 1.08996 * 110.37125 * 142.80919 * 13 12 10 25 25 H 1.08999 * 110.37544 * 265.03608 * 13 12 10 26 26 H 1.08998 * 115.55024 * 277.37318 * 17 15 14 27 27 H 1.08998 * 117.49683 * 359.97438 * 18 17 15 28 28 H 1.08994 * 117.49784 * 145.02595 * 18 17 15 29 29 H 1.08990 * 117.50139 * 214.97905 * 19 17 15 30 30 H 1.09000 * 117.49536 * 0.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 2.9954 -3.5555 -0.5477 12 6 2.3239 -4.1319 1.4454 13 6 1.5881 -5.4871 1.5365 14 8 1.5030 -5.9551 0.1701 15 6 1.1931 -4.7812 -0.6121 16 1 0.1347 -4.5357 -0.5250 17 6 1.5683 -5.0039 -2.0786 18 6 0.5253 -4.6410 -3.1376 19 6 0.8313 -6.1103 -2.8361 20 1 -0.4851 0.8400 -0.0004 21 1 0.3555 -2.3881 -0.0005 22 1 3.3926 -4.2654 1.6132 23 1 1.9115 -3.4221 2.1625 24 1 2.1601 -6.1894 2.1428 25 1 0.5910 -5.3502 1.9550 26 1 2.6165 -4.8365 -2.3264 27 1 -0.4282 -4.2439 -2.7895 28 1 0.8874 -4.2352 -4.0822 29 1 1.3945 -6.6704 -3.5825 30 1 0.0790 -6.6792 -2.2898 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236210839.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:09 Heat of formation + Delta-G solvation = -11.578298 kcal Electronic energy + Delta-G solvation = -12743.438132 eV Core-core repulsion = 10539.753569 eV Total energy + Delta-G solvation = -2203.684563 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.17374 -36.22162 -34.36234 -31.54381 -29.35264 -27.71922 -23.72620 -22.63461 -21.97370 -20.34281 -19.95572 -17.16873 -16.01660 -15.58136 -15.02236 -14.29186 -14.14549 -13.38573 -13.32571 -12.75856 -12.15261 -11.64970 -11.23669 -11.13555 -10.93632 -10.82482 -10.71290 -10.20110 -10.13205 -9.91123 -9.76865 -9.63796 -9.28221 -8.89849 -6.99975 -5.80111 -3.09542 3.41646 3.46995 3.48474 3.95791 4.49578 4.62147 4.97524 5.21817 5.34899 5.40397 5.50975 5.56081 5.72483 5.79114 5.82627 5.91530 6.01206 6.18361 6.23602 6.28666 6.42484 6.45085 6.61003 6.68344 6.93157 7.32921 7.68577 8.37935 9.49083 10.04661 10.39826 11.42336 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.038555 B = 0.010478 C = 0.008969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.069304 B = 2671.611564 C = 3121.122627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.714 5.714 10 C 0.158 3.842 11 H 0.063 0.937 12 C -0.181 4.181 13 C 0.046 3.954 14 O -0.378 6.378 15 C 0.096 3.904 16 H 0.067 0.933 17 C -0.135 4.135 18 C -0.166 4.166 19 C -0.178 4.178 20 H 0.256 0.744 21 H 0.384 0.616 22 H 0.060 0.940 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.053 0.947 26 H 0.105 0.895 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.200 -9.758 -1.544 10.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.356 5.356 10 C 0.047 3.953 11 H 0.081 0.919 12 C -0.222 4.222 13 C -0.030 4.030 14 O -0.297 6.297 15 C 0.038 3.962 16 H 0.085 0.915 17 C -0.153 4.153 18 C -0.203 4.203 19 C -0.215 4.215 20 H 0.065 0.935 21 H 0.218 0.782 22 H 0.079 0.921 23 H 0.101 0.899 24 H 0.098 0.902 25 H 0.071 0.929 26 H 0.123 0.877 27 H 0.114 0.886 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.343 -9.820 -1.629 10.226 hybrid contribution 0.146 1.194 0.193 1.219 sum 2.489 -8.625 -1.436 9.091 Atomic orbital electron populations 1.69658 1.05111 1.25737 1.57511 1.24743 0.95514 0.97696 1.02826 0.86190 0.78665 0.83791 0.77546 1.21675 1.21762 1.20744 1.19238 0.91024 0.83945 1.42911 0.91119 1.42364 1.05618 0.99462 1.88121 1.21523 0.95031 0.86474 0.92282 0.91937 1.23721 0.99987 0.96585 1.01898 1.23353 0.99459 0.95894 0.84339 1.89108 1.92191 1.30654 1.17724 1.22818 0.98722 0.85376 0.89314 0.91485 1.22110 0.97902 1.03872 0.91453 1.22921 1.00362 0.97412 0.99601 1.22861 1.03827 0.91629 1.03175 0.93457 0.78176 0.92075 0.89923 0.90203 0.92914 0.87708 0.88573 0.88788 0.89266 0.88944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.86 13.06 55.49 0.72 -27.14 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.24 -6.61 9.96 -15.06 -0.15 -6.76 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.71 -17.84 5.10 -51.91 -0.26 -18.11 16 10 C 0.16 3.27 3.32 -66.36 -0.22 3.05 16 11 H 0.06 1.32 7.62 -51.93 -0.40 0.92 16 12 C -0.18 -3.32 6.88 -25.17 -0.17 -3.50 16 13 C 0.05 0.75 7.63 37.93 0.29 1.04 16 14 O -0.38 -6.81 11.34 -35.23 -0.40 -7.21 16 15 C 0.10 1.78 3.16 -25.95 -0.08 1.70 16 16 H 0.07 1.31 7.58 -51.93 -0.39 0.91 16 17 C -0.14 -2.26 5.44 -90.62 -0.49 -2.75 16 18 C -0.17 -2.56 10.19 -26.69 -0.27 -2.83 16 19 C -0.18 -2.53 10.23 -26.69 -0.27 -2.81 16 20 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 21 H 0.38 10.18 7.59 -40.82 -0.31 9.87 16 22 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 23 H 0.08 1.65 7.97 -51.93 -0.41 1.23 16 24 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.10 1.73 7.85 -51.93 -0.41 1.32 16 27 H 0.10 1.54 8.08 -51.93 -0.42 1.12 16 28 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 254.36 15.07 3.83 3.83 Total: -1.00 -29.37 254.36 -7.02 -36.39 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -4.42 Total: 8.29 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -1.47 Total: -13.29 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: 0.46 Total: -45.25 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -0.40 Total: -7.21 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -29.37 -7.02 -36.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236210839.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.815 kcal (2) G-P(sol) polarization free energy of solvation -29.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds