Wall clock time and date at job start Sun Mar 29 2020 22:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99849 * 2 1 4 4 H 1.48495 * 109.47286 * 270.00115 * 3 2 1 5 5 H 1.48506 * 109.46783 * 30.00151 * 3 2 1 6 6 H 1.48493 * 109.46796 * 149.99794 * 3 2 1 7 7 C 1.38808 * 120.00235 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00416 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99980 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00066 * 180.02562 * 9 7 2 11 11 H 1.09005 * 110.45628 * 327.60481 * 10 9 7 12 12 C 1.54507 * 110.62941 * 90.29376 * 10 9 7 13 13 C 1.54477 * 104.06510 * 118.69948 * 12 10 9 14 14 O 1.44688 * 104.83958 * 23.98057 * 13 12 10 15 15 C 1.44428 * 105.13885 * 319.51776 * 14 13 12 16 16 H 1.09002 * 110.37130 * 281.60836 * 15 14 13 17 17 C 1.53004 * 110.37485 * 159.38171 * 15 14 13 18 18 C 1.53000 * 117.49915 * 131.69697 * 17 15 14 19 19 C 1.53005 * 117.49690 * 63.03375 * 17 15 14 20 20 H 0.97000 * 120.00639 * 0.02562 * 1 2 3 21 21 H 0.97008 * 119.99857 * 0.02562 * 9 7 2 22 22 H 1.09000 * 110.50930 * 237.34887 * 12 10 9 23 23 H 1.09000 * 110.50918 * 359.91808 * 12 10 9 24 24 H 1.08996 * 110.37125 * 142.80919 * 13 12 10 25 25 H 1.08999 * 110.37544 * 265.03608 * 13 12 10 26 26 H 1.08998 * 115.55024 * 277.37318 * 17 15 14 27 27 H 1.08998 * 117.49683 * 359.97438 * 18 17 15 28 28 H 1.08994 * 117.49784 * 145.02595 * 18 17 15 29 29 H 1.08990 * 117.50139 * 214.97905 * 19 17 15 30 30 H 1.09000 * 117.49536 * 0.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 2.9954 -3.5555 -0.5477 12 6 2.3239 -4.1319 1.4454 13 6 1.5881 -5.4871 1.5365 14 8 1.5030 -5.9551 0.1701 15 6 1.1931 -4.7812 -0.6121 16 1 0.1347 -4.5357 -0.5250 17 6 1.5683 -5.0039 -2.0786 18 6 0.5253 -4.6410 -3.1376 19 6 0.8313 -6.1103 -2.8361 20 1 -0.4851 0.8400 -0.0004 21 1 0.3555 -2.3881 -0.0005 22 1 3.3926 -4.2654 1.6132 23 1 1.9115 -3.4221 2.1625 24 1 2.1601 -6.1894 2.1428 25 1 0.5910 -5.3502 1.9550 26 1 2.6165 -4.8365 -2.3264 27 1 -0.4282 -4.2439 -2.7895 28 1 0.8874 -4.2352 -4.0822 29 1 1.3945 -6.6704 -3.5825 30 1 0.0790 -6.6792 -2.2898 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236210839.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:09 Heat of formation + Delta-G solvation = -30.373876 kcal Electronic energy + Delta-G solvation = -12744.253169 eV Core-core repulsion = 10539.753569 eV Total energy + Delta-G solvation = -2204.499600 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.63265 -37.48991 -36.25213 -33.46181 -30.96957 -29.36120 -25.71119 -24.07439 -23.18553 -21.76679 -21.52033 -19.20323 -17.54445 -17.03636 -16.46536 -16.18471 -15.57136 -15.11099 -14.70017 -14.54434 -13.80376 -13.26912 -12.94317 -12.74012 -12.43308 -12.36000 -12.23844 -12.12160 -11.82183 -11.58556 -11.16750 -11.15602 -10.83112 -10.68907 -9.03734 -7.95861 -5.25341 1.47293 1.48497 1.56871 2.53158 2.67182 3.22964 3.36459 3.62142 3.85920 3.98328 4.08272 4.15750 4.19495 4.30284 4.40460 4.58919 4.64113 4.79764 4.89266 4.96216 5.03823 5.15526 5.26187 5.29505 5.34711 5.48928 5.88468 6.25818 7.31511 8.03419 8.28531 9.27339 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.038555 B = 0.010478 C = 0.008969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.069304 B = 2671.611564 C = 3121.122627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.072 4.072 3 Si 0.972 3.028 4 H -0.287 1.287 5 H -0.296 1.296 6 H -0.270 1.270 7 C -0.240 4.240 8 H 0.075 0.925 9 N -0.724 5.724 10 C 0.149 3.851 11 H 0.057 0.943 12 C -0.176 4.176 13 C 0.049 3.951 14 O -0.380 6.380 15 C 0.105 3.895 16 H 0.053 0.947 17 C -0.159 4.159 18 C -0.172 4.172 19 C -0.152 4.152 20 H 0.251 0.749 21 H 0.373 0.627 22 H 0.077 0.923 23 H 0.063 0.937 24 H 0.113 0.887 25 H 0.056 0.944 26 H 0.106 0.894 27 H 0.083 0.917 28 H 0.106 0.894 29 H 0.114 0.886 30 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.268 -10.784 -1.711 11.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.264 4.264 3 Si 0.801 3.199 4 H -0.214 1.214 5 H -0.222 1.222 6 H -0.195 1.195 7 C -0.372 4.372 8 H 0.093 0.907 9 N -0.365 5.365 10 C 0.040 3.960 11 H 0.075 0.925 12 C -0.216 4.216 13 C -0.027 4.027 14 O -0.299 6.299 15 C 0.047 3.953 16 H 0.070 0.930 17 C -0.178 4.178 18 C -0.209 4.209 19 C -0.189 4.189 20 H 0.060 0.940 21 H 0.205 0.795 22 H 0.096 0.904 23 H 0.082 0.918 24 H 0.131 0.869 25 H 0.074 0.926 26 H 0.124 0.876 27 H 0.102 0.898 28 H 0.124 0.876 29 H 0.132 0.868 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.449 -10.888 -1.791 11.561 hybrid contribution -0.164 1.435 0.260 1.467 sum 3.285 -9.453 -1.530 10.124 Atomic orbital electron populations 1.69812 1.06571 1.26085 1.59374 1.25529 0.96343 1.00956 1.03605 0.85166 0.77732 0.79595 0.77423 1.21424 1.22240 1.19462 1.19584 0.91377 0.84996 1.41245 0.90697 1.42468 1.05178 1.00452 1.88382 1.21733 0.94759 0.85602 0.93945 0.92456 1.23581 1.01255 0.97355 0.99456 1.23480 0.99947 0.95328 0.83989 1.89108 1.92087 1.30264 1.18433 1.22604 0.97338 0.84797 0.90556 0.92954 1.22138 0.98369 1.06688 0.90585 1.22971 0.99404 0.98912 0.99603 1.22938 1.02782 0.90843 1.02341 0.93990 0.79493 0.90447 0.91821 0.86856 0.92607 0.87551 0.89833 0.87570 0.86765 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.85 13.06 21.65 0.28 -58.57 16 2 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 3 Si 0.97 45.87 29.55 68.60 2.03 47.90 16 4 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 5 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 7 C -0.24 -13.27 9.96 84.03 0.84 -12.44 16 8 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 9 N -0.72 -36.62 5.10 -318.14 -1.62 -38.24 16 10 C 0.15 6.11 3.32 46.01 0.15 6.27 16 11 H 0.06 2.39 7.62 -2.38 -0.02 2.37 16 12 C -0.18 -6.25 6.88 31.61 0.22 -6.04 16 13 C 0.05 1.49 7.63 72.48 0.55 2.04 16 14 O -0.38 -12.96 11.34 -148.98 -1.69 -14.65 16 15 C 0.11 3.84 3.16 31.10 0.10 3.94 16 16 H 0.05 2.06 7.58 -2.39 -0.02 2.04 16 17 C -0.16 -5.15 5.44 -10.79 -0.06 -5.21 16 18 C -0.17 -5.12 10.19 30.62 0.31 -4.80 16 19 C -0.15 -3.98 10.23 30.62 0.31 -3.66 16 20 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 21 H 0.37 20.28 7.59 -92.70 -0.70 19.58 16 22 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 23 H 0.06 2.51 7.97 -2.39 -0.02 2.49 16 24 H 0.11 2.71 8.14 -2.39 -0.02 2.70 16 25 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.11 3.37 7.85 -2.39 -0.02 3.35 16 27 H 0.08 2.68 8.08 -2.39 -0.02 2.66 16 28 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 29 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -61.74 254.36 2.30 -59.44 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: 0.41 Total: 27.66 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: 2.89 Total: -23.54 kcal Atomic # 7 Polarization: -95.47 SS G_CDS: -1.34 Total: -96.81 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -1.69 Total: -14.65 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -61.74 2.30 -59.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236210839.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.065 kcal (2) G-P(sol) polarization free energy of solvation -61.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds