Wall clock time and date at job start Sun Mar 29 2020 21:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 120.00037 * 2 1 4 4 H 1.48500 * 109.46854 * 239.99866 * 3 2 1 5 5 H 1.48500 * 109.46700 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47226 * 119.99661 * 3 2 1 7 7 C 1.37879 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00087 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99479 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46576 * 179.97438 * 9 7 2 11 11 C 1.34784 * 126.58671 * 125.00421 * 10 9 7 12 12 C 1.36668 * 106.83741 * 180.23977 * 11 10 9 13 13 C 1.47378 * 125.78024 * 179.73707 * 12 11 10 14 14 O 1.21518 * 120.00371 * 359.97438 * 13 12 11 15 15 O 1.34755 * 119.99812 * 179.97438 * 13 12 11 16 16 N 1.34445 * 108.43336 * 359.59971 * 12 11 10 17 17 N 1.28756 * 109.51685 * 0.40680 * 16 12 11 18 18 H 0.97001 * 120.00210 * 0.02562 * 1 2 3 19 19 H 1.08994 * 109.47229 * 59.99932 * 9 7 2 20 20 H 1.08997 * 109.47055 * 299.99528 * 9 7 2 21 21 H 1.08002 * 126.57778 * 359.96682 * 11 10 9 22 22 H 0.96698 * 116.99714 * 179.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 2.2532 -4.6267 0.8870 12 6 3.2939 -5.4293 0.5119 13 6 3.7244 -6.6597 1.1994 14 8 3.1361 -7.0382 2.1931 15 8 4.7706 -7.3650 0.7262 16 7 3.8563 -4.9078 -0.5923 17 7 3.2368 -3.8282 -0.9218 18 1 -0.4850 0.8400 -0.0004 19 1 0.6247 -2.5571 -0.8896 20 1 0.6241 -2.5567 0.8903 21 1 1.5996 -4.7740 1.7340 22 1 5.0161 -8.1648 1.2111 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000256050143.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:27 Heat of formation + Delta-G solvation = -4.801020 kcal Electronic energy + Delta-G solvation = -11711.174467 eV Core-core repulsion = 9268.410351 eV Total energy + Delta-G solvation = -2442.764116 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.60739 -39.58137 -35.90829 -34.50644 -32.52956 -30.59168 -28.02274 -24.29262 -23.83413 -21.34127 -20.61994 -17.86964 -17.25746 -16.73407 -15.69859 -15.48309 -14.66494 -14.60450 -13.78344 -13.41356 -12.61942 -12.39522 -11.56961 -11.43399 -11.25745 -11.02534 -10.79914 -10.56811 -10.39725 -10.19875 -9.41556 -8.88007 -8.70763 -6.45582 -4.53345 1.56278 2.08705 2.80014 3.16736 3.20616 3.25036 3.35121 3.38716 4.16450 4.78106 4.91065 5.21530 5.42818 5.61808 6.19076 6.53612 6.62076 6.80559 7.12893 7.53412 7.59851 8.02459 8.50093 8.62222 9.14540 10.63685 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.073686 B = 0.007791 C = 0.007522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.901619 B = 3593.217973 C = 3721.358770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.068 3.932 3 Si 0.914 3.086 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.072 0.928 9 C 0.243 3.757 10 N -0.310 5.310 11 C 0.092 3.908 12 C -0.121 4.121 13 C 0.583 3.417 14 O -0.526 6.526 15 O -0.500 6.500 16 N -0.211 5.211 17 N -0.052 5.052 18 H 0.272 0.728 19 H 0.062 0.938 20 H 0.066 0.934 21 H 0.199 0.801 22 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.289 -8.122 2.496 9.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.740 3.260 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.581 4.581 8 H 0.091 0.909 9 C 0.126 3.874 10 N -0.092 5.092 11 C -0.069 4.069 12 C -0.259 4.259 13 C 0.426 3.574 14 O -0.414 6.414 15 O -0.310 6.310 16 N -0.085 5.085 17 N -0.034 5.034 18 H 0.081 0.919 19 H 0.080 0.920 20 H 0.083 0.917 21 H 0.216 0.784 22 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 3.492 -7.144 1.274 8.053 hybrid contribution -0.140 0.134 1.269 1.284 sum 3.351 -7.010 2.544 8.175 Atomic orbital electron populations 1.69891 1.06115 1.28317 1.48340 1.24934 0.95055 0.99748 0.93896 0.86284 0.79368 0.81155 0.79206 1.19608 1.20825 1.19845 1.21105 0.94068 0.88799 1.54169 0.90940 1.20196 0.85719 0.80725 1.00718 1.51388 1.22919 1.17990 1.16893 1.23298 0.98477 0.88649 0.96521 1.20029 1.03182 1.01042 1.01646 1.19229 0.76556 0.81274 0.80382 1.90891 1.55518 1.69302 1.25699 1.84679 1.47747 1.40550 1.58026 1.74757 1.20479 1.03410 1.09866 1.82068 0.98217 1.10573 1.12499 0.91855 0.92003 0.91652 0.78386 0.73321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.64 13.29 55.43 0.74 -22.90 14 2 C 0.07 1.76 5.46 -17.82 -0.10 1.66 14 3 Si 0.91 20.27 29.54 -169.99 -5.02 15.25 14 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 14 5 H -0.28 -6.15 7.11 56.52 0.40 -5.74 14 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 14 7 C -0.54 -14.05 9.26 -34.44 -0.32 -14.37 14 8 H 0.07 1.93 7.81 -52.49 -0.41 1.52 14 9 C 0.24 5.58 6.29 -5.19 -0.03 5.55 14 10 N -0.31 -6.57 3.68 -62.23 -0.23 -6.80 14 11 C 0.09 1.66 11.27 -16.82 -0.19 1.47 14 12 C -0.12 -2.24 7.02 -83.57 -0.59 -2.83 14 13 C 0.58 9.37 8.33 34.45 0.29 9.66 14 14 O -0.53 -8.98 17.65 -19.28 -0.34 -9.32 14 15 O -0.50 -6.54 13.44 -40.64 -0.55 -7.09 14 16 N -0.21 -4.40 12.39 32.83 0.41 -3.99 14 17 N -0.05 -1.16 13.63 60.35 0.82 -0.34 14 18 H 0.27 6.85 8.31 -40.82 -0.34 6.51 14 19 H 0.06 1.48 8.14 -51.93 -0.42 1.05 14 20 H 0.07 1.44 8.08 -51.93 -0.42 1.02 14 21 H 0.20 2.84 8.06 -52.49 -0.42 2.42 14 22 H 0.41 2.92 9.11 45.56 0.42 3.33 14 LS Contribution 222.08 15.07 3.35 3.35 Total: -1.00 -29.67 222.08 -2.16 -31.83 By element: Atomic # 1 Polarization: -0.74 SS G_CDS: -0.39 Total: -1.14 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -0.94 Total: 1.15 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 1.74 Total: -34.03 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.89 Total: -16.40 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -29.67 -2.16 -31.83 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000256050143.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.024 kcal (2) G-P(sol) polarization free energy of solvation -29.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds