Wall clock time and date at job start Sun Mar 29 2020 21:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29033 * 124.91551 * 2 1 4 4 C 1.31781 * 117.12391 * 179.97438 * 3 2 1 5 5 C 1.33639 * 114.50139 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.03597 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47212 * 89.99975 * 6 5 4 8 8 C 1.50697 * 109.47466 * 179.97438 * 7 6 5 9 9 H 1.08001 * 119.99890 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00428 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99563 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00432 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46756 * 59.99920 * 12 10 8 14 14 H 1.48490 * 109.47381 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47117 * 300.00527 * 12 10 8 16 16 S 1.70977 * 124.91989 * 180.30875 * 2 1 3 17 17 H 1.09004 * 109.46618 * 89.98126 * 1 2 3 18 18 H 1.08996 * 109.47467 * 209.97467 * 1 2 3 19 19 H 1.09004 * 109.47779 * 329.98128 * 1 2 3 20 20 H 1.08006 * 122.74698 * 179.97438 * 4 3 2 21 21 H 1.09002 * 109.47060 * 210.00030 * 6 5 4 22 22 H 1.09001 * 109.47380 * 330.00118 * 6 5 4 23 23 H 1.09002 * 109.47153 * 299.99998 * 7 6 5 24 24 H 1.08998 * 109.47533 * 59.99628 * 7 6 5 25 25 H 0.97002 * 119.99731 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5511 0.8794 0.0005 5 6 3.9354 -0.4006 0.0004 6 6 5.3575 -0.8993 0.0004 7 6 5.8387 -1.0682 1.4429 8 6 7.2606 -1.5675 1.4429 9 1 7.7702 -1.7461 0.5076 10 6 7.9113 -1.7953 2.6369 11 7 7.2908 -1.5773 3.7759 12 14 9.6735 -2.4149 2.6370 13 1 10.5425 -1.4357 1.9360 14 1 10.1411 -2.5775 4.0369 15 1 9.7382 -3.7234 1.9378 16 16 2.4857 -1.4019 -0.0076 17 1 -0.3633 0.0003 -1.0277 18 1 -0.3634 -0.8902 0.5134 19 1 -0.3635 0.8898 0.5141 20 1 4.2531 1.7002 0.0002 21 1 5.4058 -1.8593 -0.5135 22 1 5.9949 -0.1797 -0.5134 23 1 5.7904 -0.1081 1.9568 24 1 5.2014 -1.7877 1.9567 25 1 7.7488 -1.7372 4.6159 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259485001.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:43 Heat of formation + Delta-G solvation = 19.915411 kcal Electronic energy + Delta-G solvation = -9889.518709 eV Core-core repulsion = 7994.119592 eV Total energy + Delta-G solvation = -1895.399117 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 197.057 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.26058 -34.39752 -32.39903 -30.69339 -27.54234 -24.72648 -23.23344 -21.09013 -18.79107 -17.57358 -16.36162 -14.74264 -14.66112 -14.42633 -13.45986 -13.24613 -12.76265 -12.65242 -12.23793 -11.90679 -11.20155 -11.18288 -10.85474 -10.69762 -9.94299 -9.81889 -9.32671 -9.15457 -8.76346 -8.39849 -8.18886 -6.04465 -4.08601 1.14758 1.73725 2.17521 3.23998 3.30981 3.35642 3.37872 4.41755 4.48207 5.26681 5.31150 5.48003 5.56678 5.65812 5.81163 5.91903 6.41889 6.45664 6.59904 6.87969 7.59388 7.69446 7.93184 8.11117 8.32174 8.97522 9.55837 11.06539 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.084663 B = 0.007247 C = 0.007212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 330.641849 B = 3862.737821 C = 3881.472187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.014 3.986 3 N -0.471 5.471 4 C 0.008 3.992 5 C -0.172 4.172 6 C -0.044 4.044 7 C 0.030 3.970 8 C -0.526 4.526 9 H 0.057 0.943 10 C 0.059 3.941 11 N -0.893 5.893 12 Si 0.895 3.105 13 H -0.276 1.276 14 H -0.287 1.287 15 H -0.276 1.276 16 S 0.103 5.897 17 H 0.079 0.921 18 H 0.076 0.924 19 H 0.083 0.917 20 H 0.173 0.827 21 H 0.065 0.935 22 H 0.075 0.925 23 H 0.020 0.980 24 H 0.018 0.982 25 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.122 0.854 -7.202 12.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.263 4.263 3 N -0.186 5.186 4 C -0.141 4.141 5 C -0.293 4.293 6 C -0.084 4.084 7 C -0.008 4.008 8 C -0.564 4.564 9 H 0.075 0.925 10 C -0.143 4.143 11 N -0.532 5.532 12 Si 0.722 3.278 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.202 1.202 16 S 0.356 5.644 17 H 0.097 0.903 18 H 0.095 0.905 19 H 0.102 0.898 20 H 0.190 0.810 21 H 0.083 0.917 22 H 0.093 0.907 23 H 0.038 0.962 24 H 0.036 0.964 25 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.596 0.318 -7.017 12.713 hybrid contribution 1.639 0.407 0.207 1.701 sum -8.957 0.725 -6.810 11.275 Atomic orbital electron populations 1.20313 0.85848 1.03681 1.03165 1.26794 1.01346 0.91465 1.06736 1.66192 1.05188 1.31820 1.15354 1.21603 0.90693 0.96152 1.05664 1.26496 1.00884 0.95623 1.06270 1.20423 0.85533 1.00069 1.02422 1.19125 0.95885 0.97582 0.88172 1.21159 0.97942 1.44839 0.92473 0.92480 1.25022 0.98199 0.95496 0.95584 1.69964 1.37231 1.48642 0.97337 0.86618 0.84736 0.79416 0.77009 1.20162 1.21240 1.20175 1.83874 0.98546 1.12819 1.69192 0.90283 0.90520 0.89830 0.81038 0.91671 0.90672 0.96154 0.96364 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.46 36.00 0.38 -0.38 15 2 C 0.01 0.22 7.39 -13.46 -0.10 0.12 15 3 N -0.47 -8.42 10.54 -11.86 -0.13 -8.55 15 4 C 0.01 0.14 11.25 -19.18 -0.22 -0.08 15 5 C -0.17 -3.24 5.85 -35.92 -0.21 -3.45 15 6 C -0.04 -0.92 5.69 -27.88 -0.16 -1.07 15 7 C 0.03 0.78 4.95 -27.89 -0.14 0.64 15 8 C -0.53 -14.70 9.11 -34.44 -0.31 -15.01 15 9 H 0.06 1.53 7.74 -52.49 -0.41 1.12 15 10 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 11 N -0.89 -26.83 13.29 55.43 0.74 -26.09 15 12 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 15 13 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 14 H -0.29 -6.82 7.11 56.52 0.40 -6.42 15 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 16 S 0.10 1.66 23.18 -107.50 -2.49 -0.83 15 17 H 0.08 0.72 8.14 -51.93 -0.42 0.29 15 18 H 0.08 0.69 8.14 -51.93 -0.42 0.27 15 19 H 0.08 0.86 8.14 -51.93 -0.42 0.44 15 20 H 0.17 2.88 8.06 -52.48 -0.42 2.46 15 21 H 0.06 1.29 8.14 -51.93 -0.42 0.87 15 22 H 0.07 1.46 8.14 -51.93 -0.42 1.04 15 23 H 0.02 0.56 8.14 -51.93 -0.42 0.13 15 24 H 0.02 0.50 8.14 -51.93 -0.42 0.08 15 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 15 LS Contribution 239.13 15.07 3.60 3.60 Total: -1.00 -30.80 239.13 -7.08 -37.88 By element: Atomic # 1 Polarization: -1.88 SS G_CDS: -2.92 Total: -4.80 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -0.86 Total: -17.66 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 0.61 Total: -34.64 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.49 Total: -0.83 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -30.80 -7.08 -37.88 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259485001.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.792 kcal (2) G-P(sol) polarization free energy of solvation -30.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds