Wall clock time and date at job start Sun Mar 29 2020 21:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35277 * 128.03664 * 2 1 4 4 O 1.34027 * 106.69286 * 179.97438 * 3 2 1 5 5 N 1.20909 * 111.86774 * 359.97438 * 4 3 2 6 6 C 1.31080 * 111.41131 * 359.72544 * 5 4 3 7 7 C 1.48166 * 126.94962 * 180.26213 * 6 5 4 8 8 O 1.21546 * 119.99951 * 180.18308 * 7 6 5 9 9 N 1.34769 * 119.99967 * 0.18487 * 7 6 5 10 10 C 1.36783 * 120.00267 * 179.97438 * 9 7 6 11 11 H 1.08004 * 119.99323 * 0.02562 * 10 9 7 12 12 C 1.39114 * 120.00288 * 180.02562 * 10 9 7 13 13 N 1.31315 * 119.99677 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99811 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47096 * 90.00201 * 14 12 10 16 16 H 1.48505 * 109.47104 * 209.99929 * 14 12 10 17 17 H 1.48497 * 109.47382 * 329.99968 * 14 12 10 18 18 H 1.09002 * 109.47152 * 90.02746 * 1 2 3 19 19 H 1.09001 * 109.46980 * 330.02846 * 1 2 3 20 20 H 1.09004 * 109.47113 * 210.02827 * 1 2 3 21 21 H 1.08002 * 126.65651 * 359.97438 * 3 2 1 22 22 H 0.96999 * 120.00477 * 359.97438 * 9 7 6 23 23 H 0.97005 * 119.99698 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3406 1.0655 0.0000 4 8 3.5889 0.5777 0.0006 5 7 3.6000 -0.6314 0.0014 6 6 2.3841 -1.1210 0.0074 7 6 2.0003 -2.5521 0.0156 8 8 0.8261 -2.8664 0.0172 9 7 2.9530 -3.5053 0.0214 10 6 2.5987 -4.8264 0.0295 11 1 1.5554 -5.1056 0.0309 12 6 3.5822 -5.8103 0.0360 13 7 4.8507 -5.4706 0.0348 14 14 3.0983 -7.6144 0.0464 15 1 2.9710 -8.1008 -1.3509 16 1 4.1407 -8.4025 0.7518 17 1 1.7985 -7.7743 0.7465 18 1 -0.3633 -0.0005 -1.0277 19 1 -0.3633 0.8903 0.5134 20 1 -0.3633 -0.8898 0.5143 21 1 2.0554 2.1072 -0.0004 22 1 3.8900 -3.2545 0.0197 23 1 5.5364 -6.1567 0.0389 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259702505.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:46 Heat of formation + Delta-G solvation = -7.235161 kcal Electronic energy + Delta-G solvation = -11904.556203 eV Core-core repulsion = 9527.112446 eV Total energy + Delta-G solvation = -2377.443757 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 196.063 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -45.99732 -40.14237 -36.33298 -35.42388 -33.80363 -32.87216 -29.09862 -27.60949 -24.99166 -22.48947 -21.45691 -20.24358 -18.80112 -18.72917 -17.48868 -16.71754 -15.90387 -15.51939 -15.28415 -14.55186 -14.10900 -14.03944 -13.63112 -13.21111 -13.01423 -12.59038 -12.20387 -12.13173 -11.69828 -11.14422 -10.78240 -10.31187 -10.23383 -8.63234 -6.11766 0.29409 0.85068 1.37916 1.41250 1.53272 2.18705 2.26279 2.41233 2.79883 3.13683 3.28845 3.85712 4.13060 4.26446 4.62836 4.83268 4.90300 5.00976 5.25416 5.44833 5.78745 6.34366 6.88660 7.16915 7.35488 7.81322 8.54075 Molecular weight = 196.06amu Principal moments of inertia in cm(-1) A = 0.064619 B = 0.009512 C = 0.008329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.205530 B = 2943.078298 C = 3361.137755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.181 4.181 3 C -0.040 4.040 4 O 0.126 5.874 5 N -0.373 5.373 6 C -0.042 4.042 7 C 0.493 3.507 8 O -0.611 6.611 9 N -0.542 5.542 10 C -0.344 4.344 11 H 0.093 0.907 12 C -0.011 4.011 13 N -0.910 5.910 14 Si 1.009 2.991 15 H -0.265 1.265 16 H -0.266 1.266 17 H -0.266 1.266 18 H 0.076 0.924 19 H 0.109 0.891 20 H 0.051 0.949 21 H 0.284 0.716 22 H 0.397 0.603 23 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.344 11.271 -0.029 11.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.187 4.187 3 C -0.120 4.120 4 O 0.051 5.949 5 N -0.074 5.074 6 C -0.199 4.199 7 C 0.280 3.720 8 O -0.498 6.498 9 N -0.176 5.176 10 C -0.473 4.473 11 H 0.111 0.889 12 C -0.213 4.213 13 N -0.549 5.549 14 Si 0.830 3.170 15 H -0.190 1.190 16 H -0.191 1.191 17 H -0.190 1.190 18 H 0.095 0.905 19 H 0.128 0.872 20 H 0.070 0.930 21 H 0.299 0.701 22 H 0.231 0.769 23 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.709 10.318 -0.025 10.668 hybrid contribution -0.244 -0.737 -0.019 0.776 sum -2.952 9.581 -0.044 10.026 Atomic orbital electron populations 1.20159 0.85740 1.03740 1.03212 1.21733 1.00142 0.89876 1.06917 1.26694 0.80584 1.02462 1.02306 1.84698 1.30815 1.14257 1.65123 1.74234 1.21983 0.92646 1.18522 1.23719 0.90485 0.97328 1.08401 1.17065 0.85783 0.83289 0.85869 1.90534 1.18313 1.82091 1.58880 1.41890 1.08558 1.05958 1.61215 1.19915 0.95115 0.81520 1.50763 0.88894 1.26420 0.94303 1.05612 0.94945 1.69683 1.00574 1.37221 1.47423 0.84710 0.78431 0.74740 0.79107 1.19021 1.19063 1.19006 0.90538 0.87226 0.92983 0.70081 0.76945 0.90538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.99 10.02 71.24 0.71 -1.28 14 2 C -0.18 -5.92 6.34 -19.53 -0.12 -6.04 14 3 C -0.04 -0.90 12.24 67.14 0.82 -0.08 14 4 O 0.13 3.86 11.18 71.77 0.80 4.66 14 5 N -0.37 -15.33 11.84 -49.47 -0.59 -15.91 14 6 C -0.04 -1.87 7.19 42.92 0.31 -1.56 14 7 C 0.49 26.93 7.79 86.88 0.68 27.60 14 8 O -0.61 -35.68 14.90 -3.86 -0.06 -35.74 14 9 N -0.54 -31.27 5.27 -309.37 -1.63 -32.90 14 10 C -0.34 -20.41 9.68 84.13 0.81 -19.59 14 11 H 0.09 5.68 7.15 -2.91 -0.02 5.66 14 12 C -0.01 -0.60 5.50 84.98 0.47 -0.14 14 13 N -0.91 -51.17 13.05 21.69 0.28 -50.89 14 14 Si 1.01 42.94 29.55 68.60 2.03 44.97 14 15 H -0.27 -10.84 7.11 99.48 0.71 -10.13 14 16 H -0.27 -10.63 7.11 99.48 0.71 -9.92 14 17 H -0.27 -11.19 7.11 99.48 0.71 -10.48 14 18 H 0.08 2.00 8.14 -2.39 -0.02 1.98 14 19 H 0.11 1.96 8.14 -2.39 -0.02 1.94 14 20 H 0.05 1.85 6.87 -2.38 -0.02 1.83 14 21 H 0.28 2.17 8.06 -2.91 -0.02 2.15 14 22 H 0.40 22.80 7.65 -92.71 -0.71 22.09 14 23 H 0.28 14.70 8.31 -92.70 -0.77 13.93 14 Total: -1.00 -72.90 220.20 5.06 -67.85 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 0.54 Total: 19.05 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 3.68 Total: -1.09 kcal Atomic # 7 Polarization: -97.77 SS G_CDS: -1.93 Total: -99.70 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: 0.74 Total: -31.08 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -72.90 5.06 -67.85 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259702505.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.610 kcal (2) G-P(sol) polarization free energy of solvation -72.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds