Wall clock time and date at job start Sun Mar 29 2020 21:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47240 * 111.00536 * 2 1 4 4 C 1.53083 * 108.47320 * 167.80437 * 3 2 1 5 5 C 1.50310 * 109.67636 * 48.98529 * 4 3 2 6 6 C 1.29755 * 122.94557 * 343.42884 * 5 4 3 7 7 C 1.50696 * 118.37812 * 180.38946 * 6 5 4 8 8 C 1.53006 * 109.46942 * 95.06363 * 7 6 5 9 9 C 1.50699 * 109.47215 * 179.97438 * 8 7 6 10 10 H 1.07998 * 120.00113 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00039 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99789 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99860 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47196 * 60.00803 * 13 11 9 15 15 H 1.48503 * 109.47121 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47454 * 300.00389 * 13 11 9 17 17 C 1.46847 * 110.99896 * 237.06275 * 2 1 3 18 18 H 1.09000 * 109.46638 * 63.95148 * 1 2 3 19 19 H 1.08992 * 109.47583 * 183.95734 * 1 2 3 20 20 H 1.09003 * 109.46895 * 303.95790 * 1 2 3 21 21 H 1.08997 * 109.63378 * 48.10794 * 3 2 1 22 22 H 1.09000 * 109.80273 * 287.60185 * 3 2 1 23 23 H 1.09002 * 109.42992 * 169.03895 * 4 3 2 24 24 H 1.09005 * 109.43199 * 288.94049 * 4 3 2 25 25 H 1.07998 * 118.55001 * 163.44906 * 5 4 3 26 26 H 1.08991 * 109.47640 * 215.06264 * 7 6 5 27 27 H 1.09002 * 109.47054 * 335.06903 * 7 6 5 28 28 H 1.09002 * 109.47169 * 299.99997 * 8 7 6 29 29 H 1.09002 * 109.47091 * 59.99920 * 8 7 6 30 30 H 0.96996 * 119.99455 * 179.97438 * 12 11 9 31 31 H 1.09002 * 109.33834 * 294.56586 * 17 2 1 32 32 H 1.09000 * 109.33190 * 54.07447 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9968 1.3746 0.0000 4 6 3.4956 1.3187 0.3067 5 6 4.1544 0.2938 -0.5735 6 6 3.4901 -0.6194 -1.2125 7 6 4.2566 -1.6016 -2.0603 8 6 4.5294 -2.8705 -1.2500 9 6 5.2954 -3.8530 -2.0980 10 1 5.5615 -3.5977 -3.1130 11 6 5.6575 -5.0773 -1.5775 12 7 5.3339 -5.3879 -0.3412 13 14 6.6077 -6.2948 -2.6283 14 1 7.8967 -5.6875 -3.0464 15 1 6.8723 -7.5265 -1.8420 16 1 5.8090 -6.6387 -3.8321 17 6 1.9953 -0.7454 -1.1506 18 1 -0.3632 0.4513 -0.9233 19 1 -0.3634 -1.0251 0.0709 20 1 -0.3633 0.5741 0.8524 21 1 1.4882 1.9622 0.7642 22 1 1.8397 1.8305 -0.9775 23 1 3.9404 2.2962 0.1208 24 1 3.6419 1.0466 1.3521 25 1 5.2290 0.3181 -0.6789 26 1 3.6706 -1.8538 -2.9440 27 1 5.2030 -1.1558 -2.3668 28 1 5.1155 -2.6183 -0.3663 29 1 3.5831 -3.3162 -0.9434 30 1 5.5883 -6.2494 0.0248 31 1 1.7254 -1.7970 -1.0534 32 1 1.5612 -0.3471 -2.0677 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260322072.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:09 Heat of formation + Delta-G solvation = 0.944474 kcal Electronic energy + Delta-G solvation = -12184.116305 eV Core-core repulsion = 10144.119343 eV Total energy + Delta-G solvation = -2039.996962 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.83704 -34.73651 -32.88745 -31.62499 -28.93032 -26.69476 -24.96295 -23.15462 -22.05718 -20.29986 -17.23862 -16.28999 -15.47635 -15.07342 -14.53508 -14.27850 -13.79817 -13.07175 -12.81834 -12.39962 -12.33527 -11.89364 -11.84787 -11.49225 -11.18838 -10.87172 -10.67842 -10.58275 -10.14899 -9.70420 -9.53624 -9.02135 -8.29718 -8.25138 -7.98542 -5.94479 -3.97542 2.83839 3.36024 3.40275 3.42840 4.11285 4.49816 5.05216 5.13200 5.31678 5.40466 5.49163 5.58629 5.64973 5.73708 5.78869 5.90771 5.92283 6.09628 6.26783 6.42731 6.55464 6.74229 6.86905 7.12370 7.18914 7.41343 7.60212 7.74969 7.93036 8.07071 8.47306 9.09761 9.65988 11.16439 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.060641 B = 0.007392 C = 0.007084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.621550 B = 3787.225260 C = 3951.746707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.538 5.538 3 C 0.052 3.948 4 C -0.079 4.079 5 C -0.178 4.178 6 C -0.102 4.102 7 C -0.080 4.080 8 C 0.032 3.968 9 C -0.523 4.523 10 H 0.054 0.946 11 C 0.057 3.943 12 N -0.894 5.894 13 Si 0.892 3.108 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C 0.092 3.908 18 H 0.022 0.978 19 H 0.069 0.931 20 H 0.065 0.935 21 H 0.071 0.929 22 H 0.032 0.968 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.104 0.896 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.017 0.983 29 H 0.016 0.984 30 H 0.261 0.739 31 H 0.090 0.910 32 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.046 11.778 -0.069 13.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.262 5.262 3 C -0.076 4.076 4 C -0.116 4.116 5 C -0.197 4.197 6 C -0.103 4.103 7 C -0.118 4.118 8 C -0.005 4.005 9 C -0.562 4.562 10 H 0.072 0.928 11 C -0.144 4.144 12 N -0.533 5.533 13 Si 0.719 3.281 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.036 4.036 18 H 0.040 0.960 19 H 0.088 0.912 20 H 0.084 0.916 21 H 0.089 0.911 22 H 0.051 0.949 23 H 0.085 0.915 24 H 0.093 0.907 25 H 0.122 0.878 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.035 0.965 29 H 0.035 0.965 30 H 0.070 0.930 31 H 0.108 0.892 32 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.882 11.394 0.502 13.320 hybrid contribution 0.286 -0.426 -1.223 1.326 sum -6.597 10.968 -0.721 12.819 Atomic orbital electron populations 1.22375 0.87652 1.02367 0.99975 1.62385 1.07251 1.13738 1.42785 1.22189 0.96206 0.89475 0.99714 1.20435 0.93480 0.97788 0.99917 1.21828 0.99282 0.98132 1.00418 1.21217 0.94135 0.96033 0.98869 1.20852 0.97349 0.96224 0.97407 1.19033 0.96784 0.89805 0.94927 1.21256 1.35542 1.00272 0.99081 0.92789 1.25025 0.96159 0.98234 0.94993 1.69972 1.46762 1.22405 1.14172 0.86671 0.80480 0.80571 0.80343 1.20271 1.21290 1.20284 1.20939 0.92848 0.99438 0.90326 0.95991 0.91173 0.91585 0.91080 0.94937 0.91541 0.90746 0.87799 0.92911 0.92623 0.96469 0.96531 0.92979 0.89161 0.94322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.58 60.07 0.58 0.88 16 2 N -0.54 -8.32 4.98 -244.41 -1.22 -9.54 16 3 C 0.05 0.70 5.59 -3.59 -0.02 0.68 16 4 C -0.08 -1.12 6.32 -28.03 -0.18 -1.30 16 5 C -0.18 -3.12 9.49 -35.87 -0.34 -3.46 16 6 C -0.10 -1.94 5.16 -100.99 -0.52 -2.46 16 7 C -0.08 -1.74 5.19 -27.88 -0.14 -1.89 16 8 C 0.03 0.85 4.95 -27.88 -0.14 0.71 16 9 C -0.52 -15.18 9.11 -34.44 -0.31 -15.49 16 10 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -27.51 13.29 55.43 0.74 -26.78 16 13 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 15 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 C 0.09 1.57 5.37 -5.28 -0.03 1.54 16 18 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 19 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 20 H 0.07 0.70 8.04 -51.93 -0.42 0.28 16 21 H 0.07 0.81 7.99 -51.93 -0.41 0.39 16 22 H 0.03 0.43 8.09 -51.93 -0.42 0.01 16 23 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.10 1.82 7.80 -52.49 -0.41 1.41 16 26 H 0.05 1.10 8.12 -51.93 -0.42 0.68 16 27 H 0.06 1.18 7.84 -51.93 -0.41 0.77 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 32 H 0.04 0.61 8.11 -51.93 -0.42 0.19 16 LS Contribution 264.38 15.07 3.98 3.98 Total: -1.00 -30.96 264.38 -8.13 -39.10 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -5.41 Total: -4.52 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: -1.21 Total: -19.23 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: -0.48 Total: -36.32 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.96 -8.13 -39.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260322072.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.042 kcal (2) G-P(sol) polarization free energy of solvation -30.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds