Wall clock time and date at job start Sun Mar 29 2020 21:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47240 * 111.00536 * 2 1 4 4 C 1.53083 * 108.47320 * 167.80437 * 3 2 1 5 5 C 1.50310 * 109.67636 * 48.98529 * 4 3 2 6 6 C 1.29755 * 122.94557 * 343.42884 * 5 4 3 7 7 C 1.50696 * 118.37812 * 180.38946 * 6 5 4 8 8 C 1.53006 * 109.46942 * 95.06363 * 7 6 5 9 9 C 1.50699 * 109.47215 * 179.97438 * 8 7 6 10 10 H 1.07998 * 120.00113 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00039 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99789 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99860 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47196 * 60.00803 * 13 11 9 15 15 H 1.48503 * 109.47121 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47454 * 300.00389 * 13 11 9 17 17 C 1.46847 * 110.99896 * 237.06275 * 2 1 3 18 18 H 1.09000 * 109.46638 * 63.95148 * 1 2 3 19 19 H 1.08992 * 109.47583 * 183.95734 * 1 2 3 20 20 H 1.09003 * 109.46895 * 303.95790 * 1 2 3 21 21 H 1.08997 * 109.63378 * 48.10794 * 3 2 1 22 22 H 1.09000 * 109.80273 * 287.60185 * 3 2 1 23 23 H 1.09002 * 109.42992 * 169.03895 * 4 3 2 24 24 H 1.09005 * 109.43199 * 288.94049 * 4 3 2 25 25 H 1.07998 * 118.55001 * 163.44906 * 5 4 3 26 26 H 1.08991 * 109.47640 * 215.06264 * 7 6 5 27 27 H 1.09002 * 109.47054 * 335.06903 * 7 6 5 28 28 H 1.09002 * 109.47169 * 299.99997 * 8 7 6 29 29 H 1.09002 * 109.47091 * 59.99920 * 8 7 6 30 30 H 0.96996 * 119.99455 * 179.97438 * 12 11 9 31 31 H 1.09002 * 109.33834 * 294.56586 * 17 2 1 32 32 H 1.09000 * 109.33190 * 54.07447 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9968 1.3746 0.0000 4 6 3.4956 1.3187 0.3067 5 6 4.1544 0.2938 -0.5735 6 6 3.4901 -0.6194 -1.2125 7 6 4.2566 -1.6016 -2.0603 8 6 4.5294 -2.8705 -1.2500 9 6 5.2954 -3.8530 -2.0980 10 1 5.5615 -3.5977 -3.1130 11 6 5.6575 -5.0773 -1.5775 12 7 5.3339 -5.3879 -0.3412 13 14 6.6077 -6.2948 -2.6283 14 1 7.8967 -5.6875 -3.0464 15 1 6.8723 -7.5265 -1.8420 16 1 5.8090 -6.6387 -3.8321 17 6 1.9953 -0.7454 -1.1506 18 1 -0.3632 0.4513 -0.9233 19 1 -0.3634 -1.0251 0.0709 20 1 -0.3633 0.5741 0.8524 21 1 1.4882 1.9622 0.7642 22 1 1.8397 1.8305 -0.9775 23 1 3.9404 2.2962 0.1208 24 1 3.6419 1.0466 1.3521 25 1 5.2290 0.3181 -0.6789 26 1 3.6706 -1.8538 -2.9440 27 1 5.2030 -1.1558 -2.3668 28 1 5.1155 -2.6183 -0.3663 29 1 3.5831 -3.3162 -0.9434 30 1 5.5883 -6.2494 0.0248 31 1 1.7254 -1.7970 -1.0534 32 1 1.5612 -0.3471 -2.0677 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260322072.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:09 Heat of formation + Delta-G solvation = -18.719404 kcal Electronic energy + Delta-G solvation = -12184.968995 eV Core-core repulsion = 10144.119343 eV Total energy + Delta-G solvation = -2040.849651 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.09322 -36.39864 -34.73703 -33.13467 -30.67880 -27.88076 -26.82143 -24.49657 -23.58347 -21.97266 -18.77439 -18.25950 -16.77361 -16.54313 -16.29282 -15.56951 -15.22150 -14.67995 -14.23211 -14.10284 -13.76696 -13.41651 -13.05650 -12.99969 -12.81077 -12.63348 -12.45785 -11.97158 -11.75746 -11.55050 -11.45712 -11.01388 -10.55652 -9.58226 -9.27022 -8.19591 -6.32587 1.37269 1.40632 1.42999 1.51270 2.41021 3.01246 3.12392 3.81607 3.94045 4.24393 4.40779 4.43523 4.50141 4.52378 4.59605 4.67312 4.83026 4.86046 4.94284 5.00378 5.09483 5.17578 5.21829 5.48770 5.58903 5.65447 5.83931 6.03549 6.20845 6.24344 6.25302 6.84533 7.36821 8.91791 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.060641 B = 0.007392 C = 0.007084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.621550 B = 3787.225260 C = 3951.746707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.560 5.560 3 C 0.053 3.947 4 C -0.079 4.079 5 C -0.168 4.168 6 C -0.130 4.130 7 C -0.068 4.068 8 C 0.040 3.960 9 C -0.548 4.548 10 H 0.061 0.939 11 C -0.001 4.001 12 N -0.933 5.933 13 Si 0.968 3.032 14 H -0.266 1.266 15 H -0.282 1.282 16 H -0.265 1.265 17 C 0.099 3.901 18 H 0.034 0.966 19 H 0.063 0.937 20 H 0.086 0.914 21 H 0.098 0.902 22 H 0.040 0.960 23 H 0.096 0.904 24 H 0.073 0.927 25 H 0.098 0.902 26 H 0.056 0.944 27 H 0.057 0.943 28 H -0.016 1.016 29 H -0.012 1.012 30 H 0.264 0.736 31 H 0.065 0.935 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.195 12.886 -0.666 14.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.284 5.284 3 C -0.075 4.075 4 C -0.116 4.116 5 C -0.186 4.186 6 C -0.130 4.130 7 C -0.106 4.106 8 C 0.003 3.997 9 C -0.586 4.586 10 H 0.080 0.920 11 C -0.199 4.199 12 N -0.573 5.573 13 Si 0.792 3.208 14 H -0.191 1.191 15 H -0.207 1.207 16 H -0.190 1.190 17 C -0.029 4.029 18 H 0.052 0.948 19 H 0.082 0.918 20 H 0.105 0.895 21 H 0.116 0.884 22 H 0.058 0.942 23 H 0.115 0.885 24 H 0.092 0.908 25 H 0.116 0.884 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.003 0.997 29 H 0.006 0.994 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.041 12.522 -0.102 14.366 hybrid contribution 0.342 -0.727 -0.977 1.265 sum -6.699 11.795 -1.079 13.608 Atomic orbital electron populations 1.22434 0.85729 1.02629 1.01508 1.62354 1.09189 1.14969 1.41914 1.22276 0.95538 0.88625 1.01054 1.20539 0.94302 0.98004 0.98793 1.22173 0.99222 0.98035 0.99178 1.21149 0.95307 0.96465 1.00125 1.20604 0.98061 0.94641 0.97248 1.18857 0.94493 0.92035 0.94290 1.21712 1.35999 1.01211 0.99707 0.92036 1.26035 0.97076 1.00441 0.96344 1.70120 1.47904 1.23146 1.16171 0.85463 0.79141 0.77657 0.78562 1.19075 1.20722 1.19018 1.20747 0.91701 0.98587 0.91846 0.94760 0.91770 0.89500 0.88369 0.94213 0.88531 0.90834 0.88398 0.92491 0.92471 0.99714 0.99352 0.92739 0.91655 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 9.58 127.69 1.22 1.78 16 2 N -0.56 -16.50 4.98 -927.18 -4.61 -21.11 16 3 C 0.05 1.26 5.59 86.27 0.48 1.74 16 4 C -0.08 -2.07 6.32 29.75 0.19 -1.88 16 5 C -0.17 -5.75 9.49 26.81 0.25 -5.50 16 6 C -0.13 -4.97 5.16 -15.38 -0.08 -5.05 16 7 C -0.07 -3.00 5.19 29.85 0.16 -2.84 16 8 C 0.04 2.26 4.95 29.85 0.15 2.40 16 9 C -0.55 -32.44 9.11 25.60 0.23 -32.20 16 10 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 11 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 12 N -0.93 -58.76 13.29 21.45 0.28 -58.48 16 13 Si 0.97 45.21 29.54 68.60 2.03 47.23 16 14 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 15 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 16 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 17 C 0.10 3.37 5.37 85.39 0.46 3.83 16 18 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 19 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 20 H 0.09 1.58 8.04 -2.39 -0.02 1.56 16 21 H 0.10 1.84 7.99 -2.39 -0.02 1.82 16 22 H 0.04 0.91 8.09 -2.39 -0.02 0.89 16 23 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 25 H 0.10 3.40 7.80 -2.91 -0.02 3.38 16 26 H 0.06 2.42 8.12 -2.39 -0.02 2.40 16 27 H 0.06 2.45 7.84 -2.39 -0.02 2.44 16 28 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 29 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 30 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 31 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.05 1.58 8.11 -2.39 -0.02 1.56 16 Total: -1.00 -67.30 264.38 2.28 -65.03 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: 1.05 Total: 4.65 kcal Atomic # 6 Polarization: -40.85 SS G_CDS: 3.53 Total: -37.32 kcal Atomic # 7 Polarization: -75.26 SS G_CDS: -4.33 Total: -79.59 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -67.30 2.28 -65.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260322072.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.308 kcal (2) G-P(sol) polarization free energy of solvation -67.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds