Wall clock time and date at job start Sun Mar 29 2020 21:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99984 * 2 1 4 4 H 1.48495 * 109.47376 * 240.00133 * 3 2 1 5 5 H 1.48506 * 109.47019 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46950 * 120.00077 * 3 2 1 7 7 C 1.37881 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99751 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00034 * 359.97438 * 7 2 1 10 10 C 1.50701 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.38224 * 120.01459 * 265.27258 * 10 9 7 12 12 C 1.38225 * 120.09259 * 180.25558 * 11 10 9 13 13 C 1.38294 * 120.12496 * 359.74852 * 12 11 10 14 14 C 1.38291 * 120.03310 * 359.97438 * 13 12 11 15 15 F 1.35098 * 120.04960 * 179.97438 * 14 13 12 16 16 C 1.38616 * 120.01378 * 85.00535 * 10 9 7 17 17 O 1.35954 * 120.06389 * 0.02562 * 16 10 9 18 18 H 0.96996 * 120.00499 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.46819 * 60.00485 * 9 7 2 20 20 H 1.08995 * 109.47277 * 300.00518 * 9 7 2 21 21 H 1.07994 * 119.95455 * 359.97438 * 11 10 9 22 22 H 1.07999 * 119.93684 * 179.77318 * 12 11 10 23 23 H 1.07998 * 119.98812 * 179.97438 * 13 12 11 24 24 H 0.96700 * 114.00435 * 269.73010 * 17 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2304 -3.6446 -0.0018 11 6 2.6038 -4.2337 -1.1952 12 6 3.4979 -5.2878 -1.1978 13 6 4.0257 -5.7532 -0.0072 14 6 3.6601 -5.1639 1.1892 15 9 4.1751 -5.6186 2.3525 16 6 2.7613 -4.1042 1.1933 17 8 2.3991 -3.5230 2.3677 18 1 -0.4851 0.8400 0.0004 19 1 0.6241 -2.5567 -0.8904 20 1 0.6247 -2.5571 0.8896 21 1 2.1930 -3.8728 -2.1264 22 1 3.7851 -5.7486 -2.1313 23 1 4.7238 -6.5772 -0.0118 24 1 2.9654 -2.7852 2.6327 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260398375.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:44 Heat of formation + Delta-G solvation = -97.102958 kcal Electronic energy + Delta-G solvation = -11867.980733 eV Core-core repulsion = 9466.720054 eV Total energy + Delta-G solvation = -2401.260679 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 196.064 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.85954 -40.51775 -37.55780 -35.42700 -32.92838 -30.53841 -28.93838 -25.40620 -23.46323 -22.35767 -19.39149 -18.47620 -18.01593 -17.50052 -16.88970 -16.50065 -16.11174 -15.13550 -14.84999 -14.43809 -14.30450 -13.38799 -13.23925 -12.93076 -12.82111 -12.57797 -12.35927 -11.94634 -11.57475 -11.18411 -10.60461 -9.55825 -9.50548 -8.20615 -6.34559 0.18349 0.32784 1.41572 1.43537 1.51835 2.38560 2.64759 3.10506 3.15572 3.47909 3.93111 4.14527 4.38924 4.44170 4.91123 5.05644 5.16037 5.22081 5.35003 5.46446 5.72174 5.82959 5.92137 6.13786 6.77487 6.78608 7.34340 8.89226 Molecular weight = 196.06amu Principal moments of inertia in cm(-1) A = 0.047887 B = 0.010337 C = 0.009663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.565422 B = 2708.094284 C = 2896.807737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.061 3.939 10 C -0.066 4.066 11 C -0.127 4.127 12 C -0.084 4.084 13 C -0.151 4.151 14 C 0.054 3.946 15 F -0.145 7.145 16 C 0.048 3.952 17 O -0.501 6.501 18 H 0.265 0.735 19 H 0.010 0.990 20 H 0.003 0.997 21 H 0.135 0.865 22 H 0.174 0.826 23 H 0.168 0.832 24 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.614 -8.221 -1.737 12.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.566 4.566 8 H 0.076 0.924 9 C 0.024 3.976 10 C -0.067 4.067 11 C -0.145 4.145 12 C -0.102 4.102 13 C -0.169 4.169 14 C 0.034 3.966 15 F -0.124 7.124 16 C 0.002 3.998 17 O -0.312 6.312 18 H 0.074 0.926 19 H 0.028 0.972 20 H 0.021 0.979 21 H 0.153 0.847 22 H 0.192 0.808 23 H 0.186 0.814 24 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 8.034 -8.546 -1.684 11.850 hybrid contribution 0.300 1.391 0.529 1.518 sum 8.334 -7.155 -1.155 11.044 Atomic orbital electron populations 1.70078 1.07824 1.28057 1.50930 1.25918 0.95680 1.03107 0.94448 0.85474 0.78213 0.77977 0.79224 1.19098 1.20937 1.19189 1.21250 0.93026 0.90807 1.51504 0.92371 1.17983 0.92773 0.90721 0.96139 1.20733 0.97389 0.96063 0.92527 1.21301 0.99100 0.96924 0.97167 1.21373 0.94931 0.95010 0.98880 1.21312 1.03247 1.02545 0.89835 1.18324 0.97502 0.97977 0.82793 1.91423 1.85488 1.88113 1.47331 1.18527 0.98514 0.96198 0.86547 1.84711 1.58378 1.51832 1.36303 0.92572 0.97178 0.97861 0.84669 0.80820 0.81413 0.74461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.51 13.29 21.45 0.28 -55.23 14 2 C 0.01 0.39 5.46 84.66 0.46 0.86 14 3 Si 0.97 43.11 29.54 68.60 2.03 45.13 14 4 H -0.27 -11.37 7.11 99.48 0.71 -10.66 14 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 14 6 H -0.27 -11.43 7.11 99.48 0.71 -10.72 14 7 C -0.53 -29.20 9.09 25.60 0.23 -28.96 14 8 H 0.06 3.10 7.74 -2.91 -0.02 3.08 14 9 C 0.06 3.23 4.82 29.10 0.14 3.37 14 10 C -0.07 -2.89 5.08 -19.78 -0.10 -2.99 14 11 C -0.13 -4.43 9.68 22.26 0.22 -4.21 14 12 C -0.08 -2.21 10.04 22.28 0.22 -1.99 14 13 C -0.15 -4.10 10.02 22.30 0.22 -3.87 14 14 C 0.05 1.87 7.31 22.45 0.16 2.04 14 15 F -0.14 -5.02 17.11 44.97 0.77 -4.25 14 16 C 0.05 1.97 6.68 22.53 0.15 2.12 14 17 O -0.50 -21.41 12.51 -93.04 -1.16 -22.57 14 18 H 0.27 14.93 8.31 -92.71 -0.77 14.16 14 19 H 0.01 0.56 8.05 -2.39 -0.02 0.54 14 20 H 0.00 0.18 7.69 -2.39 -0.02 0.17 14 21 H 0.14 4.45 8.06 -2.91 -0.02 4.43 14 22 H 0.17 2.95 8.06 -2.91 -0.02 2.92 14 23 H 0.17 3.25 8.06 -2.91 -0.02 3.23 14 24 H 0.40 14.40 9.06 -74.06 -0.67 13.73 14 Total: -1.00 -65.63 226.98 4.18 -61.45 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 0.55 Total: 9.11 kcal Atomic # 6 Polarization: -35.35 SS G_CDS: 1.71 Total: -33.64 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: 0.28 Total: -55.23 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -1.16 Total: -22.57 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 0.77 Total: -4.25 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -65.63 4.18 -61.45 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260398375.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.655 kcal (2) G-P(sol) polarization free energy of solvation -65.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds