Wall clock time and date at job start Sun Mar 29 2020 21:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46847 * 110.99957 * 2 1 4 4 C 1.50138 * 110.27607 * 287.54174 * 3 2 1 5 5 C 1.29824 * 123.28394 * 342.94601 * 4 3 2 6 6 C 1.50699 * 118.55067 * 180.65798 * 5 4 3 7 7 C 1.53002 * 109.47437 * 94.73275 * 6 5 4 8 8 C 1.50699 * 109.47058 * 179.97438 * 7 6 5 9 9 H 1.07995 * 120.00203 * 359.97438 * 8 7 6 10 10 C 1.37881 * 119.99620 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00189 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99689 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47472 * 359.97438 * 12 10 8 14 14 H 1.48509 * 109.47302 * 120.00121 * 12 10 8 15 15 H 1.48507 * 109.47041 * 239.99508 * 12 10 8 16 16 C 1.50306 * 122.89234 * 0.37239 * 5 4 3 17 17 C 1.47245 * 111.00146 * 237.07446 * 2 1 3 18 18 H 1.09008 * 109.46949 * 182.92859 * 1 2 3 19 19 H 1.09002 * 109.47556 * 302.92631 * 1 2 3 20 20 H 1.08999 * 109.47399 * 62.93238 * 1 2 3 21 21 H 1.08999 * 109.33341 * 47.78794 * 3 2 1 22 22 H 1.09000 * 109.33955 * 167.45407 * 3 2 1 23 23 H 1.08000 * 118.35721 * 162.96624 * 4 3 2 24 24 H 1.09009 * 109.47121 * 214.73129 * 6 5 4 25 25 H 1.09000 * 109.47246 * 334.72694 * 6 5 4 26 26 H 1.08997 * 109.46733 * 299.99616 * 7 6 5 27 27 H 1.09000 * 109.47377 * 59.99499 * 7 6 5 28 28 H 0.97000 * 120.00186 * 180.02562 * 11 10 8 29 29 H 1.09006 * 109.42717 * 103.57879 * 16 5 4 30 30 H 1.08999 * 109.42986 * 223.47543 * 16 5 4 31 31 H 1.09001 * 109.63105 * 294.88217 * 17 2 1 32 32 H 1.08997 * 109.80426 * 174.37462 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 1.7853 2.0088 -1.3429 5 6 1.5191 1.3329 -2.4189 6 6 1.3432 2.0818 -3.7147 7 6 2.6701 2.1024 -4.4762 8 6 2.4939 2.8507 -5.7723 9 1 1.5317 3.2694 -6.0276 10 6 3.5613 3.0008 -6.6322 11 7 4.7331 2.4914 -6.3210 12 14 3.3427 3.9278 -8.2391 13 1 1.9387 4.3980 -8.3524 14 1 4.2600 5.0955 -8.2658 15 1 3.6558 3.0265 -9.3771 16 6 1.3849 -0.1641 -2.4302 17 6 1.9966 -0.7472 -1.1538 18 1 -0.3633 -1.0264 0.0525 19 1 -0.3634 0.5586 0.8626 20 1 -0.3634 0.4676 -0.9151 21 1 1.4793 1.9555 0.7618 22 1 3.0618 1.3482 0.2234 23 1 1.8599 3.0836 -1.4175 24 1 0.5843 1.5864 -4.3205 25 1 1.0294 3.1041 -3.5039 26 1 3.4289 2.5977 -3.8705 27 1 2.9840 1.0800 -4.6870 28 1 5.4841 2.5974 -6.9258 29 1 0.3298 -0.4331 -2.4823 30 1 1.9054 -0.5683 -3.2984 31 1 1.7246 -1.7989 -1.0645 32 1 3.0818 -0.6514 -1.1909 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260517813.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:11 Heat of formation + Delta-G solvation = 1.515245 kcal Electronic energy + Delta-G solvation = -12291.709177 eV Core-core repulsion = 10251.736965 eV Total energy + Delta-G solvation = -2039.972211 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.34310 -34.71399 -32.59841 -30.62448 -29.72850 -27.17251 -24.83063 -23.29884 -21.94048 -20.40003 -17.23346 -16.36601 -15.50630 -15.02986 -14.52051 -14.21830 -13.96525 -13.26235 -12.78600 -12.39514 -12.07042 -11.88230 -11.72096 -11.48781 -11.21728 -10.96846 -10.84000 -10.57855 -10.35245 -9.76761 -9.67246 -9.09702 -8.36245 -8.15778 -8.09896 -6.00734 -4.03649 2.71883 3.29957 3.37353 3.41693 4.18849 4.45286 5.08877 5.23042 5.32994 5.34764 5.43710 5.51720 5.67749 5.72417 5.92315 5.94734 6.01560 6.15714 6.18468 6.29856 6.44840 6.68643 6.88572 7.12380 7.14225 7.25023 7.49832 7.67655 7.84710 7.99704 8.41132 9.03705 9.60463 11.10382 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.076611 B = 0.007177 C = 0.007114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.396433 B = 3900.194672 C = 3934.703074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.536 5.536 3 C 0.087 3.913 4 C -0.224 4.224 5 C -0.092 4.092 6 C -0.083 4.083 7 C 0.031 3.969 8 C -0.522 4.522 9 H 0.055 0.945 10 C 0.057 3.943 11 N -0.895 5.895 12 Si 0.892 3.108 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C -0.122 4.122 17 C 0.051 3.949 18 H 0.062 0.938 19 H 0.062 0.938 20 H 0.036 0.964 21 H 0.075 0.925 22 H 0.080 0.920 23 H 0.105 0.895 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.016 0.984 27 H 0.015 0.985 28 H 0.260 0.740 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.581 -4.400 10.221 12.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.258 5.258 3 C -0.041 4.041 4 C -0.243 4.243 5 C -0.092 4.092 6 C -0.120 4.120 7 C -0.006 4.006 8 C -0.560 4.560 9 H 0.073 0.927 10 C -0.144 4.144 11 N -0.534 5.534 12 Si 0.719 3.281 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.210 1.210 16 C -0.160 4.160 17 C -0.077 4.077 18 H 0.081 0.919 19 H 0.081 0.919 20 H 0.055 0.945 21 H 0.093 0.907 22 H 0.098 0.902 23 H 0.123 0.877 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.248 -4.659 10.612 13.166 hybrid contribution -0.241 1.024 -1.803 2.088 sum -6.488 -3.636 8.808 11.528 Atomic orbital electron populations 1.22409 0.88105 1.01554 1.00968 1.62804 1.07976 1.13812 1.41178 1.20992 1.00543 0.87837 0.94724 1.22522 1.06321 1.00280 0.95188 1.21255 0.97189 0.94782 0.95990 1.20892 1.01231 0.97554 0.92356 1.19032 0.90370 0.97133 0.94022 1.21316 0.96162 1.34745 1.03805 0.92671 1.25029 0.95275 0.95818 0.98323 1.69979 1.00899 1.45532 1.36991 0.86544 0.78176 0.79672 0.83664 1.19752 1.20968 1.20972 1.21052 1.01384 0.93698 0.99864 1.22260 1.00219 0.97414 0.87805 0.91881 0.91898 0.94500 0.90712 0.90182 0.87687 0.92903 0.92840 0.96575 0.96624 0.93040 0.91116 0.89913 0.90715 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 8.91 60.06 0.53 0.76 16 2 N -0.54 -7.44 5.29 -244.42 -1.29 -8.73 16 3 C 0.09 1.24 5.94 -5.28 -0.03 1.21 16 4 C -0.22 -3.79 9.06 -35.97 -0.33 -4.12 16 5 C -0.09 -1.68 4.51 -100.93 -0.46 -2.14 16 6 C -0.08 -1.78 5.20 -27.88 -0.15 -1.93 16 7 C 0.03 0.83 4.96 -27.88 -0.14 0.69 16 8 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 9 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 10 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 11 N -0.89 -27.27 13.29 55.43 0.74 -26.54 16 12 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 13 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 16 C -0.12 -1.94 5.24 -28.03 -0.15 -2.08 16 17 C 0.05 0.72 6.06 -3.59 -0.02 0.70 16 18 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 19 H 0.06 0.69 8.05 -51.93 -0.42 0.27 16 20 H 0.04 0.49 5.68 -51.93 -0.29 0.20 16 21 H 0.07 0.94 7.98 -51.93 -0.41 0.53 16 22 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 23 H 0.11 1.82 7.81 -52.49 -0.41 1.41 16 24 H 0.05 1.11 8.13 -51.92 -0.42 0.69 16 25 H 0.05 1.14 7.85 -51.93 -0.41 0.73 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 29 H 0.07 1.04 6.94 -51.93 -0.36 0.68 16 30 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.15 8.09 -51.93 -0.42 0.73 16 LS Contribution 259.30 15.07 3.91 3.91 Total: -1.00 -30.34 259.30 -8.03 -38.38 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: -5.22 Total: -3.13 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: -1.14 Total: -20.74 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: -0.56 Total: -35.27 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.34 -8.03 -38.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260517813.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.892 kcal (2) G-P(sol) polarization free energy of solvation -30.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds