Wall clock time and date at job start Sun Mar 29 2020 21:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99661 * 359.97438 * 7 2 1 10 10 C 1.53938 * 113.73743 * 278.76613 * 9 7 2 11 11 N 1.48191 * 86.10300 * 221.96162 * 10 9 7 12 12 C 1.46892 * 111.07128 * 137.51829 * 11 10 9 13 13 C 1.54264 * 110.03154 * 197.72964 * 12 11 10 14 14 C 1.54895 * 104.19792 * 217.10490 * 13 12 11 15 15 C 1.54890 * 102.74323 * 37.94384 * 14 13 12 16 16 C 1.53873 * 110.03242 * 80.56472 * 12 11 10 17 17 C 1.47964 * 90.79968 * 24.59530 * 11 10 9 18 18 H 0.97001 * 119.99697 * 179.97438 * 1 2 3 19 19 H 1.09001 * 112.94085 * 50.33414 * 9 7 2 20 20 H 1.09001 * 113.75393 * 336.23896 * 10 9 7 21 21 H 1.09000 * 113.75902 * 107.60261 * 10 9 7 22 22 H 1.08995 * 110.01985 * 319.17312 * 12 11 10 23 23 H 1.08998 * 110.48861 * 335.78839 * 13 12 11 24 24 H 1.09000 * 110.48537 * 98.42835 * 13 12 11 25 25 H 1.09000 * 110.75417 * 279.62936 * 14 13 12 26 26 H 1.09001 * 110.75474 * 156.25776 * 14 13 12 27 27 H 1.09007 * 110.48260 * 203.37642 * 15 14 13 28 28 H 1.09005 * 110.59951 * 80.79303 * 15 14 13 29 29 H 1.09004 * 110.03703 * 238.56931 * 16 12 11 30 30 H 1.09006 * 110.03340 * 359.95443 * 16 12 11 31 31 H 1.08996 * 113.75963 * 221.08562 * 17 11 10 32 32 H 1.09004 * 113.75398 * 89.72220 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 0.7558 -2.9274 1.3949 11 7 1.1894 -4.2934 1.0178 12 6 1.8778 -4.9558 2.1336 13 6 2.6945 -6.1564 1.6126 14 6 2.5450 -7.2275 2.7215 15 6 1.0746 -7.0477 3.1741 16 6 0.8479 -5.5226 3.1264 17 6 2.1611 -3.7399 0.0488 18 1 -0.4850 -0.8401 -0.0004 19 1 0.4835 -2.5472 -0.7707 20 1 1.3282 -2.4961 2.2161 21 1 -0.3215 -2.8283 1.5276 22 1 2.5343 -4.2483 2.6399 23 1 2.2804 -6.5203 0.6723 24 1 3.7415 -5.8802 1.4877 25 1 3.2300 -7.0285 3.5456 26 1 2.7053 -8.2270 2.3172 27 1 0.9395 -7.4220 4.1889 28 1 0.3972 -7.5558 2.4877 29 1 1.0051 -5.0906 4.1148 30 1 -0.1628 -5.3053 2.7807 31 1 2.2044 -4.2887 -0.8919 32 1 3.1453 -3.5467 0.4756 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260995236.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:24:28 Heat of formation + Delta-G solvation = 10.495435 kcal Electronic energy + Delta-G solvation = -12532.476364 eV Core-core repulsion = 10492.893563 eV Total energy + Delta-G solvation = -2039.582801 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.34635 -36.57231 -32.70297 -29.17139 -28.59462 -25.77765 -24.87864 -23.13236 -20.37040 -19.54428 -18.78971 -16.84715 -15.82057 -15.00687 -14.58886 -13.80043 -13.69100 -13.29350 -13.06234 -12.08607 -11.77935 -11.51115 -11.14245 -10.94680 -10.88461 -10.80267 -10.56062 -10.48567 -10.21717 -10.10832 -9.71776 -9.24405 -8.66224 -8.37696 -7.86085 -6.37169 -4.08086 3.42716 3.45632 3.61564 4.50768 4.75382 4.77868 4.86967 5.16349 5.34086 5.63299 5.67430 5.75350 5.80171 5.90346 5.96343 6.02674 6.10704 6.19290 6.25124 6.30832 6.47818 6.50889 6.56829 6.57318 6.74705 6.89734 7.17744 7.54962 8.02083 8.21457 8.41475 8.86039 9.64779 11.02567 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.073657 B = 0.008174 C = 0.007942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.046662 B = 3424.658067 C = 3524.530413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.022 3.978 3 Si 1.070 2.930 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.596 4.596 8 H 0.050 0.950 9 C 0.018 3.982 10 C 0.005 3.995 11 N -0.484 5.484 12 C 0.046 3.954 13 C -0.116 4.116 14 C -0.123 4.123 15 C -0.119 4.119 16 C -0.114 4.114 17 C 0.009 3.991 18 H 0.271 0.729 19 H 0.047 0.953 20 H 0.056 0.944 21 H 0.062 0.938 22 H 0.042 0.958 23 H 0.073 0.927 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.771 -10.420 4.982 12.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.183 4.183 3 Si 0.898 3.102 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.634 4.634 8 H 0.068 0.932 9 C -0.001 4.001 10 C -0.124 4.124 11 N -0.207 5.207 12 C -0.063 4.063 13 C -0.154 4.154 14 C -0.161 4.161 15 C -0.157 4.157 16 C -0.152 4.152 17 C -0.119 4.119 18 H 0.082 0.918 19 H 0.065 0.935 20 H 0.075 0.925 21 H 0.081 0.919 22 H 0.061 0.939 23 H 0.091 0.909 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.089 -9.263 4.794 10.878 hybrid contribution 0.879 -1.152 0.442 1.515 sum 3.968 -10.415 5.236 12.314 Atomic orbital electron populations 1.70746 1.06844 1.30883 1.45847 1.25826 0.96550 1.02570 0.93387 0.83535 0.74669 0.75182 0.76807 1.21380 1.21565 1.20983 1.21961 0.93988 0.91420 1.56062 0.93192 1.20460 0.94367 0.92894 0.92401 1.24202 0.99551 0.87497 1.01190 1.68636 1.26089 1.16495 1.09500 1.22790 0.94517 0.95795 0.93218 1.22388 0.99116 0.95015 0.98852 1.22457 0.96769 0.98552 0.98297 1.22303 0.96546 0.96419 1.00430 1.22103 1.00224 0.94850 0.98027 1.23842 0.95288 0.97058 0.95737 0.91782 0.93466 0.92524 0.91938 0.93948 0.90858 0.92321 0.91908 0.91933 0.92300 0.91710 0.92555 0.90985 0.91808 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.35 13.65 55.43 0.76 -26.59 16 2 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 3 Si 1.07 25.14 29.90 -169.99 -5.08 20.05 16 4 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.60 -16.77 8.77 -34.44 -0.30 -17.07 16 8 H 0.05 1.40 7.81 -52.49 -0.41 0.99 16 9 C 0.02 0.46 3.06 -90.84 -0.28 0.18 16 10 C 0.00 0.11 7.23 -2.63 -0.02 0.09 16 11 N -0.48 -10.03 5.82 -228.77 -1.33 -11.36 16 12 C 0.05 0.81 2.28 -66.60 -0.15 0.66 16 13 C -0.12 -1.74 5.75 -25.07 -0.14 -1.88 16 14 C -0.12 -1.52 6.91 -24.73 -0.17 -1.69 16 15 C -0.12 -1.52 6.83 -25.07 -0.17 -1.69 16 16 C -0.11 -1.76 6.40 -25.61 -0.16 -1.93 16 17 C 0.01 0.20 6.82 -2.76 -0.02 0.19 16 18 H 0.27 8.15 7.01 -40.82 -0.29 7.86 16 19 H 0.05 1.29 7.70 -51.93 -0.40 0.89 16 20 H 0.06 1.37 7.61 -51.93 -0.40 0.97 16 21 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 22 H 0.04 0.80 7.70 -51.93 -0.40 0.40 16 23 H 0.07 1.15 8.05 -51.93 -0.42 0.73 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 1.20 7.92 -51.93 -0.41 0.79 16 31 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.05 1.20 7.87 -51.93 -0.41 0.79 16 LS Contribution 257.02 15.07 3.87 3.87 Total: -1.00 -29.12 257.02 -8.61 -37.73 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -5.31 Total: -1.07 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: -1.52 Total: -22.63 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: -0.57 Total: -37.95 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -5.08 Total: 20.05 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.12 -8.61 -37.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260995236.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.223 kcal (2) G-P(sol) polarization free energy of solvation -29.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds