Wall clock time and date at job start Sun Mar 29 2020 21:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99661 * 359.97438 * 7 2 1 10 10 C 1.53938 * 113.73743 * 278.76613 * 9 7 2 11 11 N 1.48191 * 86.10300 * 221.96162 * 10 9 7 12 12 C 1.46892 * 111.07128 * 137.51829 * 11 10 9 13 13 C 1.54264 * 110.03154 * 197.72964 * 12 11 10 14 14 C 1.54895 * 104.19792 * 217.10490 * 13 12 11 15 15 C 1.54890 * 102.74323 * 37.94384 * 14 13 12 16 16 C 1.53873 * 110.03242 * 80.56472 * 12 11 10 17 17 C 1.47964 * 90.79968 * 24.59530 * 11 10 9 18 18 H 0.97001 * 119.99697 * 179.97438 * 1 2 3 19 19 H 1.09001 * 112.94085 * 50.33414 * 9 7 2 20 20 H 1.09001 * 113.75393 * 336.23896 * 10 9 7 21 21 H 1.09000 * 113.75902 * 107.60261 * 10 9 7 22 22 H 1.08995 * 110.01985 * 319.17312 * 12 11 10 23 23 H 1.08998 * 110.48861 * 335.78839 * 13 12 11 24 24 H 1.09000 * 110.48537 * 98.42835 * 13 12 11 25 25 H 1.09000 * 110.75417 * 279.62936 * 14 13 12 26 26 H 1.09001 * 110.75474 * 156.25776 * 14 13 12 27 27 H 1.09007 * 110.48260 * 203.37642 * 15 14 13 28 28 H 1.09005 * 110.59951 * 80.79303 * 15 14 13 29 29 H 1.09004 * 110.03703 * 238.56931 * 16 12 11 30 30 H 1.09006 * 110.03340 * 359.95443 * 16 12 11 31 31 H 1.08996 * 113.75963 * 221.08562 * 17 11 10 32 32 H 1.09004 * 113.75398 * 89.72220 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 0.7558 -2.9274 1.3949 11 7 1.1894 -4.2934 1.0178 12 6 1.8778 -4.9558 2.1336 13 6 2.6945 -6.1564 1.6126 14 6 2.5450 -7.2275 2.7215 15 6 1.0746 -7.0477 3.1741 16 6 0.8479 -5.5226 3.1264 17 6 2.1611 -3.7399 0.0488 18 1 -0.4850 -0.8401 -0.0004 19 1 0.4835 -2.5472 -0.7707 20 1 1.3282 -2.4961 2.2161 21 1 -0.3215 -2.8283 1.5276 22 1 2.5343 -4.2483 2.6399 23 1 2.2804 -6.5203 0.6723 24 1 3.7415 -5.8802 1.4877 25 1 3.2300 -7.0285 3.5456 26 1 2.7053 -8.2270 2.3172 27 1 0.9395 -7.4220 4.1889 28 1 0.3972 -7.5558 2.4877 29 1 1.0051 -5.0906 4.1148 30 1 -0.1628 -5.3053 2.7807 31 1 2.2044 -4.2887 -0.8919 32 1 3.1453 -3.5467 0.4756 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260995236.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:24:28 Heat of formation + Delta-G solvation = -7.855103 kcal Electronic energy + Delta-G solvation = -12533.272103 eV Core-core repulsion = 10492.893563 eV Total energy + Delta-G solvation = -2040.378540 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.00607 -37.96052 -34.80585 -30.74984 -29.78554 -27.59447 -26.69252 -25.01221 -21.45750 -21.20706 -20.49646 -18.85200 -17.25528 -16.56625 -16.19293 -15.66971 -15.22141 -14.96802 -14.26935 -13.88697 -13.50431 -13.28758 -12.97348 -12.62167 -12.05636 -12.01023 -11.97387 -11.94276 -11.65906 -11.51568 -11.42109 -11.17633 -10.66227 -10.52047 -9.67290 -8.64752 -6.36702 1.52774 1.61159 1.78816 2.55737 3.10228 3.15273 3.58378 3.71773 3.95005 4.15230 4.27961 4.39693 4.46048 4.53504 4.54904 4.62211 4.70834 4.79005 4.84926 4.94243 4.98423 5.05500 5.11164 5.17932 5.29818 5.44905 5.48045 5.52998 6.03736 6.15163 6.30549 6.59408 7.44465 8.74798 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.073657 B = 0.008174 C = 0.007942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.046662 B = 3424.658067 C = 3524.530413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.028 4.028 3 Si 1.117 2.883 4 H -0.272 1.272 5 H -0.272 1.272 6 H -0.283 1.283 7 C -0.609 4.609 8 H 0.048 0.952 9 C -0.002 4.002 10 C 0.016 3.984 11 N -0.478 5.478 12 C 0.038 3.962 13 C -0.114 4.114 14 C -0.114 4.114 15 C -0.114 4.114 16 C -0.115 4.115 17 C 0.024 3.976 18 H 0.258 0.742 19 H 0.021 0.979 20 H 0.046 0.954 21 H 0.052 0.948 22 H 0.029 0.971 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.061 -11.529 5.721 13.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.227 4.227 3 Si 0.939 3.061 4 H -0.198 1.198 5 H -0.197 1.197 6 H -0.209 1.209 7 C -0.647 4.647 8 H 0.066 0.934 9 C -0.021 4.021 10 C -0.113 4.113 11 N -0.201 5.201 12 C -0.071 4.071 13 C -0.152 4.152 14 C -0.152 4.152 15 C -0.151 4.151 16 C -0.153 4.153 17 C -0.104 4.104 18 H 0.068 0.932 19 H 0.039 0.961 20 H 0.064 0.936 21 H 0.071 0.929 22 H 0.047 0.953 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.093 0.907 26 H 0.102 0.898 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.386 -10.406 5.530 12.574 hybrid contribution 0.469 -0.852 0.206 0.994 sum 4.855 -11.258 5.735 13.536 Atomic orbital electron populations 1.70873 1.07834 1.30139 1.48045 1.27295 0.96595 1.06397 0.92433 0.82929 0.74126 0.71292 0.77771 1.19799 1.19685 1.20870 1.22294 0.94096 0.92760 1.55534 0.93409 1.20495 0.94861 0.93864 0.92897 1.23898 0.98719 0.89264 0.99405 1.68604 1.26288 1.14708 1.10514 1.22970 0.95202 0.96374 0.92597 1.22383 0.98684 0.94585 0.99534 1.22449 0.96553 0.98584 0.97582 1.22295 0.96930 0.93934 1.01971 1.22118 0.98421 0.97195 0.97566 1.23692 0.94763 0.95229 0.96765 0.93184 0.96101 0.93564 0.92899 0.95270 0.91551 0.91826 0.90698 0.89777 0.89977 0.91658 0.91778 0.92734 0.90398 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.35 13.65 21.45 0.29 -57.05 16 2 C -0.03 -1.64 5.46 84.65 0.46 -1.17 16 3 Si 1.12 50.26 29.90 68.60 2.05 52.31 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 6 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.61 -34.66 8.77 25.60 0.22 -34.44 16 8 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16 9 C 0.00 -0.11 3.06 -10.89 -0.03 -0.14 16 10 C 0.02 0.79 7.23 86.37 0.62 1.41 16 11 N -0.48 -19.76 5.82 -877.68 -5.10 -24.86 16 12 C 0.04 1.29 2.28 45.64 0.10 1.39 16 13 C -0.11 -3.16 5.75 31.67 0.18 -2.98 16 14 C -0.11 -2.40 6.91 31.89 0.22 -2.18 16 15 C -0.11 -2.55 6.83 31.67 0.22 -2.33 16 16 C -0.11 -3.38 6.40 31.32 0.20 -3.18 16 17 C 0.02 1.05 6.82 86.41 0.59 1.64 16 18 H 0.26 16.11 7.01 -92.71 -0.65 15.46 16 19 H 0.02 1.19 7.70 -2.39 -0.02 1.17 16 20 H 0.05 2.28 7.61 -2.39 -0.02 2.26 16 21 H 0.05 2.59 8.14 -2.39 -0.02 2.57 16 22 H 0.03 1.08 7.70 -2.39 -0.02 1.06 16 23 H 0.07 1.94 8.05 -2.39 -0.02 1.92 16 24 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 29 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.05 1.79 7.92 -2.38 -0.02 1.77 16 31 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 32 H 0.06 2.43 7.87 -2.38 -0.02 2.42 16 Total: -1.00 -62.59 257.02 1.21 -61.38 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 1.18 Total: 10.21 kcal Atomic # 6 Polarization: -44.78 SS G_CDS: 2.79 Total: -41.99 kcal Atomic # 7 Polarization: -77.10 SS G_CDS: -4.81 Total: -81.91 kcal Atomic # 14 Polarization: 50.26 SS G_CDS: 2.05 Total: 52.31 kcal Total: -62.59 1.21 -61.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260995236.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.525 kcal (2) G-P(sol) polarization free energy of solvation -62.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds