Wall clock time and date at job start Sun Mar 29 2020 21:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28444 * 125.19663 * 2 1 4 4 C 1.30886 * 110.95737 * 180.02562 * 3 2 1 5 5 C 1.39621 * 107.88776 * 359.74092 * 4 3 2 6 6 C 1.36671 * 125.20178 * 180.02562 * 2 1 3 7 7 C 1.46942 * 126.89686 * 359.97438 * 6 2 1 8 8 O 1.21586 * 119.99875 * 179.97438 * 7 6 2 9 9 O 1.34818 * 119.99813 * 359.97438 * 7 6 2 10 10 C 1.34844 * 116.99840 * 180.02562 * 9 7 6 11 11 H 1.07997 * 120.00211 * 0.02562 * 10 9 7 12 12 C 1.38820 * 120.00100 * 179.73027 * 10 9 7 13 13 N 1.31412 * 119.99705 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99943 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.46989 * 359.97438 * 14 12 10 16 16 H 1.48492 * 109.47271 * 119.99669 * 14 12 10 17 17 H 1.48501 * 109.46681 * 239.99724 * 14 12 10 18 18 H 1.09005 * 109.47108 * 269.97651 * 1 2 3 19 19 H 1.08999 * 109.47304 * 29.97503 * 1 2 3 20 20 H 1.08998 * 109.46884 * 149.97334 * 1 2 3 21 21 H 1.08001 * 126.05628 * 180.02562 * 4 3 2 22 22 H 1.08002 * 127.33010 * 180.27156 * 5 4 3 23 23 H 0.97004 * 120.00113 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2053 1.0496 0.0000 4 6 3.4739 0.7277 -0.0005 5 6 3.5628 -0.6657 0.0051 6 6 2.2528 -1.1168 -0.0005 7 6 1.8011 -2.5151 -0.0006 8 8 2.6163 -3.4172 -0.0015 9 8 0.4829 -2.7976 0.0004 10 6 0.1361 -4.1007 0.0007 11 1 0.9011 -4.8630 0.0007 12 6 -1.2041 -4.4623 0.0074 13 7 -2.1349 -3.5346 0.0138 14 14 -1.6845 -6.2675 0.0086 15 1 -0.4588 -7.1058 0.0012 16 1 -2.4819 -6.5667 1.2250 17 1 -2.4945 -6.5649 -1.1999 18 1 -0.3633 -0.0004 1.0277 19 1 -0.3634 0.8902 -0.5134 20 1 -0.3633 -0.8897 -0.5142 21 1 4.3048 1.4176 -0.0003 22 1 4.4615 -1.2646 0.0103 23 1 -3.0715 -3.7873 0.0188 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306160569.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:21 Heat of formation + Delta-G solvation = -21.773472 kcal Electronic energy + Delta-G solvation = -12080.825060 eV Core-core repulsion = 9702.750874 eV Total energy + Delta-G solvation = -2378.074186 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 196.063 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.45991 -40.86705 -37.40010 -34.52485 -34.14321 -31.98514 -28.12449 -27.68238 -24.68407 -22.46858 -21.28765 -20.00932 -19.14707 -17.41013 -17.38723 -16.31828 -16.25060 -16.23215 -15.08735 -14.69446 -14.25890 -13.77870 -13.63951 -13.29258 -13.22571 -12.48561 -12.31091 -12.09275 -11.84348 -11.32078 -10.75163 -10.26154 -10.03714 -8.61924 -6.37897 0.11762 1.34671 1.38019 1.50586 1.54748 1.64128 2.03747 2.06497 2.56122 2.94857 3.60987 4.00882 4.30376 4.34349 4.53785 4.59388 4.85355 4.99726 5.11540 5.50208 5.73728 5.75858 6.45013 6.83238 7.02668 7.58246 8.57782 Molecular weight = 196.06amu Principal moments of inertia in cm(-1) A = 0.065577 B = 0.010486 C = 0.009085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.875845 B = 2669.701663 C = 3081.426925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.272 5.272 3 N -0.291 5.291 4 C 0.005 3.995 5 C -0.169 4.169 6 C -0.033 4.033 7 C 0.462 3.538 8 O -0.566 6.566 9 O -0.223 6.223 10 C -0.422 4.422 11 H 0.083 0.917 12 C 0.006 3.994 13 N -0.887 5.887 14 Si 1.017 2.983 15 H -0.267 1.267 16 H -0.259 1.259 17 H -0.259 1.259 18 H 0.087 0.913 19 H 0.119 0.881 20 H 0.090 0.910 21 H 0.234 0.766 22 H 0.176 0.824 23 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.365 5.782 -0.092 6.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.062 5.062 3 N -0.125 5.125 4 C -0.170 4.170 5 C -0.198 4.198 6 C -0.158 4.158 7 C 0.310 3.690 8 O -0.463 6.463 9 O -0.130 6.130 10 C -0.498 4.498 11 H 0.101 0.899 12 C -0.196 4.196 13 N -0.524 5.524 14 Si 0.836 3.164 15 H -0.191 1.191 16 H -0.184 1.184 17 H -0.183 1.183 18 H 0.106 0.894 19 H 0.138 0.862 20 H 0.108 0.892 21 H 0.251 0.749 22 H 0.193 0.807 23 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.407 6.461 -0.089 6.895 hybrid contribution 0.241 -1.557 0.040 1.576 sum 2.648 4.904 -0.049 5.574 Atomic orbital electron populations 1.22386 0.71430 1.06105 1.05224 1.46015 1.08623 1.01807 1.49750 1.73107 1.05195 1.13740 1.20480 1.24234 0.93852 0.94280 1.04658 1.22440 0.94712 0.96195 1.06423 1.21010 0.93198 0.85790 1.15836 1.20133 0.82481 0.87840 0.78577 1.90642 1.55410 1.47789 1.52482 1.83933 1.22787 1.30303 1.76000 1.21549 0.93372 0.79783 1.55083 0.89880 1.26463 0.93303 1.05555 0.94328 1.69992 1.01533 1.35501 1.45324 0.84569 0.78682 0.73856 0.79300 1.19065 1.18383 1.18345 0.89447 0.86215 0.89180 0.74934 0.80683 0.90806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.12 10.81 127.77 1.38 4.50 14 2 N -0.27 -10.54 3.75 -356.08 -1.34 -11.87 14 3 N -0.29 -9.91 11.90 -57.16 -0.68 -10.59 14 4 C 0.00 0.13 12.03 85.17 1.02 1.16 14 5 C -0.17 -5.90 10.85 22.68 0.25 -5.65 14 6 C -0.03 -1.42 6.96 40.75 0.28 -1.14 14 7 C 0.46 24.46 7.87 70.10 0.55 25.02 14 8 O -0.57 -32.26 16.17 19.56 0.32 -31.94 14 9 O -0.22 -12.73 7.20 10.56 0.08 -12.65 14 10 C -0.42 -24.84 9.65 67.96 0.66 -24.19 14 11 H 0.08 5.02 6.86 -2.91 -0.02 5.00 14 12 C 0.01 0.31 5.50 84.89 0.47 0.78 14 13 N -0.89 -48.60 13.67 21.64 0.30 -48.30 14 14 Si 1.02 41.58 29.55 68.60 2.03 43.60 14 15 H -0.27 -10.90 7.11 99.48 0.71 -10.20 14 16 H -0.26 -9.91 7.11 99.48 0.71 -9.20 14 17 H -0.26 -9.89 7.11 99.48 0.71 -9.18 14 18 H 0.09 2.97 8.14 -2.38 -0.02 2.95 14 19 H 0.12 3.34 8.14 -2.39 -0.02 3.32 14 20 H 0.09 3.84 6.15 -2.39 -0.01 3.82 14 21 H 0.23 4.09 8.06 -2.91 -0.02 4.07 14 22 H 0.18 5.42 8.06 -2.91 -0.02 5.40 14 23 H 0.28 13.97 8.31 -92.71 -0.77 13.20 14 Total: -1.00 -68.65 220.94 6.54 -62.11 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: 1.23 Total: 9.19 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 4.61 Total: 0.47 kcal Atomic # 7 Polarization: -69.05 SS G_CDS: -1.72 Total: -70.77 kcal Atomic # 8 Polarization: -44.99 SS G_CDS: 0.39 Total: -44.60 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.60 kcal Total: -68.65 6.54 -62.11 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306160569.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.334 kcal (2) G-P(sol) polarization free energy of solvation -68.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds