Wall clock time and date at job start Sun Mar 29 2020 21:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31439 * 1 3 3 Si 1.86798 * 119.99765 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99631 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99812 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99805 * 3 2 1 7 7 C 1.38751 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00012 * 179.97438 * 7 2 1 9 9 O 1.34923 * 120.00196 * 0.02562 * 7 2 1 10 10 C 1.34306 * 116.99762 * 179.97438 * 9 7 2 11 11 O 1.21210 * 120.00615 * 0.02562 * 10 9 7 12 12 C 1.50707 * 119.99449 * 179.97438 * 10 9 7 13 13 H 1.09001 * 115.56138 * 325.65680 * 12 10 9 14 14 C 1.53127 * 117.51166 * 111.39532 * 12 10 9 15 15 C 1.52454 * 59.85704 * 107.44482 * 14 12 10 16 16 C 1.53263 * 128.58531 * 117.60150 * 15 14 12 17 17 C 1.53888 * 86.88342 * 114.94273 * 16 15 14 18 18 C 1.53254 * 128.58641 * 242.39423 * 15 14 12 19 19 H 0.97001 * 119.99678 * 179.97438 * 1 2 3 20 20 H 1.09004 * 117.51119 * 214.89682 * 14 12 10 21 21 H 1.09005 * 117.51028 * 359.95149 * 14 12 10 22 22 H 1.08994 * 113.64432 * 229.44499 * 16 15 14 23 23 H 1.08997 * 113.64332 * 0.44195 * 16 15 14 24 24 H 1.09000 * 113.58897 * 270.39378 * 17 16 15 25 25 H 1.08994 * 113.66040 * 139.58224 * 17 16 15 26 26 H 1.09004 * 113.64324 * 359.55927 * 18 15 14 27 27 H 1.08999 * 113.64692 * 130.46975 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4959 2.0465 -1.4001 5 1 3.5459 1.4403 0.7001 6 1 1.4458 2.6527 0.7000 7 6 2.0082 -1.2016 0.0005 8 1 3.0882 -1.2016 0.0001 9 8 1.3336 -2.3701 0.0005 10 6 2.0652 -3.4964 0.0005 11 8 3.2756 -3.4330 0.0010 12 6 1.3810 -4.8392 0.0011 13 1 0.4442 -4.8896 0.5562 14 6 1.5008 -5.6947 -1.2632 15 6 2.2661 -6.0806 -0.0024 16 6 2.1341 -7.3511 0.8447 17 6 3.5745 -7.6844 0.4178 18 6 3.7816 -6.1746 0.2047 19 1 -0.4850 -0.8401 -0.0004 20 1 0.6431 -6.3081 -1.5393 21 1 2.0738 -5.2857 -2.0954 22 1 2.0284 -7.1559 1.9118 23 1 1.3920 -8.0539 0.4659 24 1 3.6332 -8.2668 -0.5018 25 1 4.1837 -8.0993 1.2207 26 1 4.3605 -5.9342 -0.6871 27 1 4.1348 -5.6507 1.0929 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306161247.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:43 Heat of formation + Delta-G solvation = -41.941275 kcal Electronic energy + Delta-G solvation = -12169.960428 eV Core-core repulsion = 9894.552044 eV Total energy + Delta-G solvation = -2275.408384 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.089 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.79624 -38.28739 -35.20663 -33.29256 -32.02444 -25.59813 -25.40790 -23.35789 -22.89034 -19.91663 -18.03453 -17.93394 -16.54034 -15.33567 -15.05172 -14.87312 -14.31163 -13.78729 -13.53579 -12.31490 -12.17571 -11.74582 -11.37949 -11.32824 -11.04273 -10.85440 -10.42110 -10.23071 -10.12718 -9.80223 -9.70571 -9.45675 -8.91794 -8.48435 -6.70433 -4.06741 3.16165 3.30841 3.44275 3.52549 3.92165 4.13321 4.40123 4.79735 4.87314 4.99353 5.07311 5.22808 5.29582 5.52513 5.75229 5.83758 5.91159 5.96997 6.01045 6.20769 6.36475 6.49510 6.58530 6.75630 7.66876 8.47116 8.56365 9.11412 9.83284 10.74806 Molecular weight = 196.09amu Principal moments of inertia in cm(-1) A = 0.078406 B = 0.008301 C = 0.007812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 357.029102 B = 3372.421231 C = 3583.369675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.012 3.988 3 Si 1.102 2.898 4 H -0.281 1.281 5 H -0.282 1.282 6 H -0.276 1.276 7 C -0.462 4.462 8 H 0.086 0.914 9 O -0.236 6.236 10 C 0.430 3.570 11 O -0.546 6.546 12 C -0.135 4.135 13 H 0.121 0.879 14 C -0.126 4.126 15 C -0.132 4.132 16 C -0.098 4.098 17 C -0.142 4.142 18 C -0.081 4.081 19 H 0.280 0.720 20 H 0.103 0.897 21 H 0.099 0.901 22 H 0.084 0.916 23 H 0.067 0.933 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.766 -11.584 0.007 11.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.193 4.193 3 Si 0.926 3.074 4 H -0.208 1.208 5 H -0.208 1.208 6 H -0.201 1.201 7 C -0.538 4.538 8 H 0.104 0.896 9 O -0.145 6.145 10 C 0.276 3.724 11 O -0.442 6.442 12 C -0.154 4.154 13 H 0.139 0.861 14 C -0.163 4.163 15 C -0.132 4.132 16 C -0.135 4.135 17 C -0.179 4.179 18 C -0.118 4.118 19 H 0.090 0.910 20 H 0.121 0.879 21 H 0.118 0.882 22 H 0.103 0.897 23 H 0.086 0.914 24 H 0.096 0.904 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.860 -9.872 0.015 10.278 hybrid contribution 0.070 -1.622 -0.019 1.624 sum 2.930 -11.495 -0.004 11.862 Atomic orbital electron populations 1.70520 1.06593 1.31496 1.43273 1.26598 0.96794 1.01145 0.94781 0.83025 0.74232 0.72797 0.77368 1.20751 1.20779 1.20146 1.22136 0.93719 0.81302 1.56657 0.89579 1.83593 1.40463 1.14069 1.76333 1.21986 0.86080 0.85633 0.78664 1.90532 1.15396 1.87736 1.50562 1.21478 1.01534 0.88250 1.04184 0.86123 1.22787 1.01655 1.00832 0.90983 1.22294 0.96027 0.94396 1.00526 1.22488 0.97266 0.94460 0.99256 1.22813 0.96611 0.97294 1.01191 1.22294 0.92805 0.94107 1.02606 0.90973 0.87900 0.88220 0.89722 0.91443 0.90367 0.91503 0.91425 0.89450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.08 13.69 55.48 0.76 -26.32 15 2 C 0.01 0.34 5.49 -17.53 -0.10 0.24 15 3 Si 1.10 25.23 29.92 -169.99 -5.09 20.15 15 4 H -0.28 -6.12 7.11 56.52 0.40 -5.71 15 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 15 7 C -0.46 -14.22 9.65 30.92 0.30 -13.92 15 8 H 0.09 2.70 6.86 -52.49 -0.36 2.34 15 9 O -0.24 -6.99 9.15 -20.70 -0.19 -7.18 15 10 C 0.43 11.12 7.69 36.01 0.28 11.39 15 11 O -0.55 -15.08 14.37 -19.05 -0.27 -15.36 15 12 C -0.14 -2.64 6.30 -91.98 -0.58 -3.22 15 13 H 0.12 2.16 8.14 -51.93 -0.42 1.74 15 14 C -0.13 -2.01 10.24 -26.95 -0.28 -2.29 15 15 C -0.13 -2.14 2.88 -154.80 -0.45 -2.59 15 16 C -0.10 -1.23 8.10 -26.13 -0.21 -1.44 15 17 C -0.14 -1.71 8.08 -25.81 -0.21 -1.92 15 18 C -0.08 -1.30 6.47 -26.14 -0.17 -1.47 15 19 H 0.28 8.67 7.97 -40.82 -0.33 8.35 15 20 H 0.10 1.33 8.14 -51.93 -0.42 0.90 15 21 H 0.10 1.67 8.14 -51.93 -0.42 1.25 15 22 H 0.08 1.04 8.14 -51.93 -0.42 0.62 15 23 H 0.07 0.73 8.14 -51.93 -0.42 0.31 15 24 H 0.08 0.85 8.14 -51.93 -0.42 0.43 15 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 15 26 H 0.07 1.13 8.14 -51.93 -0.42 0.71 15 27 H 0.09 1.53 8.04 -51.93 -0.42 1.12 15 LS Contribution 241.35 15.07 3.64 3.64 Total: -1.00 -33.61 241.35 -5.84 -39.45 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -3.28 Total: 0.84 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -1.41 Total: -15.22 kcal Atomic # 7 Polarization: -27.08 SS G_CDS: 0.76 Total: -26.32 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.46 Total: -22.54 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -5.09 Total: 20.15 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -33.61 -5.84 -39.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306161247.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.487 kcal (2) G-P(sol) polarization free energy of solvation -33.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds