Wall clock time and date at job start Sun Mar 29 2020 21:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31439 * 1 3 3 Si 1.86798 * 119.99765 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99631 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99812 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99805 * 3 2 1 7 7 C 1.38751 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00012 * 179.97438 * 7 2 1 9 9 O 1.34923 * 120.00196 * 0.02562 * 7 2 1 10 10 C 1.34306 * 116.99762 * 179.97438 * 9 7 2 11 11 O 1.21210 * 120.00615 * 0.02562 * 10 9 7 12 12 C 1.50707 * 119.99449 * 179.97438 * 10 9 7 13 13 H 1.09001 * 115.56138 * 325.65680 * 12 10 9 14 14 C 1.53127 * 117.51166 * 111.39532 * 12 10 9 15 15 C 1.52454 * 59.85704 * 107.44482 * 14 12 10 16 16 C 1.53263 * 128.58531 * 117.60150 * 15 14 12 17 17 C 1.53888 * 86.88342 * 114.94273 * 16 15 14 18 18 C 1.53254 * 128.58641 * 242.39423 * 15 14 12 19 19 H 0.97001 * 119.99678 * 179.97438 * 1 2 3 20 20 H 1.09004 * 117.51119 * 214.89682 * 14 12 10 21 21 H 1.09005 * 117.51028 * 359.95149 * 14 12 10 22 22 H 1.08994 * 113.64432 * 229.44499 * 16 15 14 23 23 H 1.08997 * 113.64332 * 0.44195 * 16 15 14 24 24 H 1.09000 * 113.58897 * 270.39378 * 17 16 15 25 25 H 1.08994 * 113.66040 * 139.58224 * 17 16 15 26 26 H 1.09004 * 113.64324 * 359.55927 * 18 15 14 27 27 H 1.08999 * 113.64692 * 130.46975 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4959 2.0465 -1.4001 5 1 3.5459 1.4403 0.7001 6 1 1.4458 2.6527 0.7000 7 6 2.0082 -1.2016 0.0005 8 1 3.0882 -1.2016 0.0001 9 8 1.3336 -2.3701 0.0005 10 6 2.0652 -3.4964 0.0005 11 8 3.2756 -3.4330 0.0010 12 6 1.3810 -4.8392 0.0011 13 1 0.4442 -4.8896 0.5562 14 6 1.5008 -5.6947 -1.2632 15 6 2.2661 -6.0806 -0.0024 16 6 2.1341 -7.3511 0.8447 17 6 3.5745 -7.6844 0.4178 18 6 3.7816 -6.1746 0.2047 19 1 -0.4850 -0.8401 -0.0004 20 1 0.6431 -6.3081 -1.5393 21 1 2.0738 -5.2857 -2.0954 22 1 2.0284 -7.1559 1.9118 23 1 1.3920 -8.0539 0.4659 24 1 3.6332 -8.2668 -0.5018 25 1 4.1837 -8.0993 1.2207 26 1 4.3605 -5.9342 -0.6871 27 1 4.1348 -5.6507 1.0929 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306161247.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:43 Heat of formation + Delta-G solvation = -62.977147 kcal Electronic energy + Delta-G solvation = -12170.872612 eV Core-core repulsion = 9894.552044 eV Total energy + Delta-G solvation = -2276.320568 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.089 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.52123 -39.99748 -37.32215 -34.70957 -34.26953 -27.64716 -26.61586 -25.27907 -23.99341 -21.74029 -20.15984 -19.33369 -18.49642 -17.27176 -16.73109 -16.13077 -16.03904 -15.58850 -15.41852 -13.87071 -13.45028 -13.24339 -13.04551 -12.96244 -12.50293 -12.39383 -12.32308 -11.95820 -11.93156 -11.34988 -11.09729 -10.94454 -10.76167 -10.69999 -9.07845 -6.47300 1.24794 1.44860 1.64454 1.76885 2.14379 2.54920 2.68013 2.96432 3.51121 3.63450 3.74256 3.86651 3.92751 4.42090 4.47668 4.64264 4.68959 4.81801 4.84963 4.96051 5.07483 5.11991 5.26477 5.34027 5.48892 6.11954 6.35591 6.85144 7.60155 8.38872 Molecular weight = 196.09amu Principal moments of inertia in cm(-1) A = 0.078406 B = 0.008301 C = 0.007812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 357.029102 B = 3372.421231 C = 3583.369675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.027 4.027 3 Si 1.148 2.852 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.261 1.261 7 C -0.496 4.496 8 H 0.069 0.931 9 O -0.266 6.266 10 C 0.427 3.573 11 O -0.571 6.571 12 C -0.170 4.170 13 H 0.137 0.863 14 C -0.103 4.103 15 C -0.129 4.129 16 C -0.085 4.085 17 C -0.121 4.121 18 C -0.101 4.101 19 H 0.266 0.734 20 H 0.146 0.854 21 H 0.086 0.914 22 H 0.088 0.912 23 H 0.098 0.902 24 H 0.098 0.902 25 H 0.085 0.915 26 H 0.051 0.949 27 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.668 -13.174 -0.161 13.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.226 4.226 3 Si 0.963 3.037 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.185 1.185 7 C -0.571 4.571 8 H 0.087 0.913 9 O -0.175 6.175 10 C 0.275 3.725 11 O -0.468 6.468 12 C -0.189 4.189 13 H 0.154 0.846 14 C -0.140 4.140 15 C -0.130 4.130 16 C -0.122 4.122 17 C -0.158 4.158 18 C -0.138 4.138 19 H 0.075 0.925 20 H 0.164 0.836 21 H 0.104 0.896 22 H 0.107 0.893 23 H 0.116 0.884 24 H 0.116 0.884 25 H 0.104 0.896 26 H 0.069 0.931 27 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.757 -11.505 -0.157 11.832 hybrid contribution 0.164 -1.244 0.024 1.255 sum 2.921 -12.749 -0.133 13.080 Atomic orbital electron populations 1.70645 1.07320 1.30535 1.44879 1.28452 0.96886 1.04468 0.92763 0.82558 0.73549 0.68696 0.78897 1.18454 1.19594 1.18474 1.22301 0.93272 0.82767 1.58803 0.91333 1.83639 1.41301 1.14832 1.77756 1.23378 0.86229 0.86863 0.76038 1.90498 1.16808 1.88342 1.51150 1.21619 1.03108 0.85673 1.08485 0.84557 1.22958 1.02658 0.98940 0.89451 1.22734 0.95648 0.93760 1.00816 1.22544 0.98386 0.92342 0.98891 1.22766 0.96334 0.93904 1.02766 1.22396 0.92768 0.97781 1.00898 0.92530 0.83578 0.89564 0.89342 0.88351 0.88369 0.89638 0.93053 0.91908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -56.04 13.69 21.62 0.30 -55.74 15 2 C -0.03 -1.61 5.49 84.87 0.47 -1.15 15 3 Si 1.15 50.50 29.92 68.60 2.05 52.55 15 4 H -0.26 -10.51 7.11 99.48 0.71 -9.80 15 5 H -0.27 -11.32 7.11 99.48 0.71 -10.61 15 6 H -0.26 -10.75 7.11 99.48 0.71 -10.05 15 7 C -0.50 -31.66 9.65 67.94 0.66 -31.00 15 8 H 0.07 4.50 6.86 -2.91 -0.02 4.48 15 9 O -0.27 -16.37 9.15 14.88 0.14 -16.24 15 10 C 0.43 22.82 7.69 71.24 0.55 23.37 15 11 O -0.57 -32.88 14.37 20.77 0.30 -32.58 15 12 C -0.17 -6.56 6.30 -11.67 -0.07 -6.64 15 13 H 0.14 4.77 8.14 -2.39 -0.02 4.75 15 14 C -0.10 -3.09 10.24 30.46 0.31 -2.78 15 15 C -0.13 -3.95 2.88 -52.37 -0.15 -4.10 15 16 C -0.08 -1.80 8.10 30.98 0.25 -1.55 15 17 C -0.12 -2.49 8.08 31.19 0.25 -2.24 15 18 C -0.10 -3.18 6.47 30.98 0.20 -2.98 15 19 H 0.27 16.98 7.97 -92.71 -0.74 16.25 15 20 H 0.15 3.12 8.14 -2.38 -0.02 3.10 15 21 H 0.09 2.81 8.14 -2.38 -0.02 2.79 15 22 H 0.09 1.86 8.14 -2.39 -0.02 1.84 15 23 H 0.10 1.57 8.14 -2.39 -0.02 1.55 15 24 H 0.10 1.69 8.14 -2.39 -0.02 1.67 15 25 H 0.09 1.49 8.14 -2.39 -0.02 1.47 15 26 H 0.05 1.73 8.14 -2.39 -0.02 1.71 15 27 H 0.06 2.26 8.04 -2.39 -0.02 2.24 15 Total: -1.00 -76.10 241.35 6.43 -69.67 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: 1.19 Total: 11.40 kcal Atomic # 6 Polarization: -31.52 SS G_CDS: 2.46 Total: -29.06 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: 0.30 Total: -55.74 kcal Atomic # 8 Polarization: -49.25 SS G_CDS: 0.43 Total: -48.82 kcal Atomic # 14 Polarization: 50.50 SS G_CDS: 2.05 Total: 52.55 kcal Total: -76.10 6.43 -69.67 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306161247.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.690 kcal (2) G-P(sol) polarization free energy of solvation -76.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds