Wall clock time and date at job start Sun Mar 29 2020 22:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.40168 * 126.35002 * 2 1 4 4 C 1.29403 * 108.14037 * 180.02562 * 3 2 1 5 5 N 1.37361 * 108.82559 * 359.97438 * 4 3 2 6 6 C 1.46505 * 125.82810 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47212 * 90.02600 * 6 5 4 8 8 C 1.50697 * 109.47466 * 179.97438 * 7 6 5 9 9 H 1.08001 * 119.99890 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00428 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99563 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00432 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.46616 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47104 * 119.99966 * 12 10 8 15 15 H 1.48489 * 109.47200 * 240.00246 * 12 10 8 16 16 C 1.34810 * 108.33629 * 0.24535 * 5 4 3 17 17 O 1.21823 * 126.29785 * 179.75653 * 16 5 4 18 18 H 1.09000 * 109.47070 * 0.02849 * 1 2 3 19 19 H 1.09002 * 109.47051 * 120.02257 * 1 2 3 20 20 H 1.09000 * 109.47059 * 240.02765 * 1 2 3 21 21 H 1.08000 * 125.58753 * 180.02562 * 4 3 2 22 22 H 1.09002 * 109.47068 * 210.02661 * 6 5 4 23 23 H 1.09001 * 109.47372 * 330.02748 * 6 5 4 24 24 H 1.09002 * 109.47153 * 300.00008 * 7 6 5 25 25 H 1.08998 * 109.47533 * 59.99637 * 7 6 5 26 26 H 0.97002 * 119.99731 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2958 1.1289 0.0000 4 6 3.5251 0.7246 -0.0005 5 7 3.5398 -0.6490 -0.0003 6 6 4.7368 -1.4937 -0.0013 7 6 5.1545 -1.7881 1.4408 8 6 6.3854 -2.6576 1.4398 9 1 6.8260 -2.9687 0.5042 10 6 6.9497 -3.0550 2.6334 11 7 6.4134 -2.6756 3.7728 12 14 8.4750 -4.1333 2.6322 13 1 8.8779 -4.4192 1.2318 14 1 9.5799 -3.4286 3.3307 15 1 8.1801 -5.4087 3.3331 16 6 2.2648 -1.0868 -0.0051 17 8 1.9016 -2.2496 -0.0105 18 1 -0.3633 1.0277 -0.0005 19 1 -0.3633 -0.5142 -0.8898 20 1 -0.3633 -0.5134 0.8902 21 1 4.3966 1.3625 -0.0003 22 1 4.5201 -2.4303 -0.5152 23 1 5.5465 -0.9760 -0.5156 24 1 5.3712 -0.8516 1.9547 25 1 4.3449 -2.3058 1.9551 26 1 6.8106 -2.9549 4.6125 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306189974.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:01 Heat of formation + Delta-G solvation = 14.058416 kcal Electronic energy + Delta-G solvation = -12212.568456 eV Core-core repulsion = 9906.455241 eV Total energy + Delta-G solvation = -2306.113215 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.32783 -38.33804 -36.96906 -35.08375 -33.03996 -31.13732 -28.37976 -26.73618 -23.87400 -23.19485 -21.87865 -18.92229 -18.15220 -17.67251 -16.85159 -16.55914 -16.45025 -15.47624 -14.87294 -14.71856 -14.28235 -13.79587 -13.45628 -13.38376 -12.96884 -12.87867 -12.56409 -12.09245 -12.00856 -11.39907 -11.30762 -10.77861 -10.60827 -9.54517 -8.23755 -6.36424 0.90323 1.07978 1.42897 1.44402 1.57074 1.64053 2.32717 2.44785 3.11717 3.57507 4.08240 4.18827 4.43633 4.49818 4.54678 4.68404 4.74596 4.90867 5.12722 5.39492 5.50690 5.67532 5.81043 6.11157 6.68684 6.79627 7.00853 7.34343 8.89051 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.071091 B = 0.007836 C = 0.007673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.769457 B = 3572.577840 C = 3648.127586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.462 5.462 3 N -0.308 5.308 4 C 0.274 3.726 5 N -0.554 5.554 6 C 0.144 3.856 7 C 0.018 3.982 8 C -0.540 4.540 9 H 0.076 0.924 10 C 0.001 3.999 11 N -0.935 5.935 12 Si 0.971 3.029 13 H -0.255 1.255 14 H -0.276 1.276 15 H -0.286 1.286 16 C 0.620 3.380 17 O -0.606 6.606 18 H 0.120 0.880 19 H 0.080 0.920 20 H 0.070 0.930 21 H 0.277 0.723 22 H 0.070 0.930 23 H 0.128 0.872 24 H 0.011 0.989 25 H -0.028 1.028 26 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.690 8.396 -8.330 12.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.015 4.015 2 N -0.283 5.283 3 N -0.130 5.130 4 C -0.024 4.024 5 N -0.279 5.279 6 C 0.024 3.976 7 C -0.020 4.020 8 C -0.578 4.578 9 H 0.094 0.906 10 C -0.198 4.198 11 N -0.575 5.575 12 Si 0.795 3.205 13 H -0.178 1.178 14 H -0.201 1.201 15 H -0.212 1.212 16 C 0.318 3.682 17 O -0.484 6.484 18 H 0.138 0.862 19 H 0.099 0.901 20 H 0.089 0.911 21 H 0.292 0.708 22 H 0.089 0.911 23 H 0.146 0.854 24 H 0.029 0.971 25 H -0.010 1.010 26 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.645 8.376 -8.171 12.992 hybrid contribution 0.919 -1.381 0.618 1.770 sum -4.726 6.995 -7.553 11.327 Atomic orbital electron populations 1.21840 0.70687 1.05742 1.03229 1.49149 1.07857 1.02645 1.68687 1.76942 0.99761 1.09826 1.26501 1.26915 0.98427 0.82553 0.94455 1.46504 1.07735 1.08682 1.64966 1.21898 0.82622 0.93789 0.99336 1.19288 0.94968 0.96158 0.91606 1.21526 1.11231 1.31610 0.93432 0.90602 1.26011 1.01044 0.97610 0.95099 1.70130 1.42252 1.46895 0.98199 0.85301 0.78368 0.77815 0.78971 1.17820 1.20103 1.21225 1.17200 0.82856 0.85727 0.82375 1.90993 1.78903 1.17385 1.61132 0.86206 0.90095 0.91096 0.70764 0.91105 0.85384 0.97068 1.00969 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.93 11.41 127.77 1.46 4.39 15 2 N -0.46 -15.36 4.03 -499.66 -2.01 -17.37 15 3 N -0.31 -9.02 12.53 -59.41 -0.74 -9.76 15 4 C 0.27 7.38 12.66 179.82 2.28 9.65 15 5 N -0.55 -20.11 2.74 -660.09 -1.81 -21.92 15 6 C 0.14 5.58 5.96 86.38 0.51 6.09 15 7 C 0.02 0.91 5.30 29.85 0.16 1.07 15 8 C -0.54 -29.18 9.11 25.60 0.23 -28.95 15 9 H 0.08 3.79 7.74 -2.91 -0.02 3.76 15 10 C 0.00 0.03 5.46 84.65 0.46 0.49 15 11 N -0.93 -56.46 13.29 21.45 0.28 -56.17 15 12 Si 0.97 42.96 29.54 68.60 2.03 44.98 15 13 H -0.25 -10.49 7.11 99.48 0.71 -9.78 15 14 H -0.28 -11.77 7.11 99.48 0.71 -11.06 15 15 H -0.29 -12.71 7.11 99.48 0.71 -12.01 15 16 C 0.62 25.63 8.60 178.99 1.54 27.17 15 17 O -0.61 -30.07 17.74 -4.74 -0.08 -30.16 15 18 H 0.12 2.04 8.14 -2.39 -0.02 2.02 15 19 H 0.08 1.72 8.14 -2.39 -0.02 1.70 15 20 H 0.07 1.66 8.14 -2.39 -0.02 1.64 15 21 H 0.28 4.15 8.06 -2.91 -0.02 4.12 15 22 H 0.07 2.93 8.07 -2.39 -0.02 2.91 15 23 H 0.13 3.84 8.14 -2.39 -0.02 3.82 15 24 H 0.01 0.58 8.14 -2.39 -0.02 0.56 15 25 H -0.03 -1.72 8.14 -2.39 -0.02 -1.74 15 26 H 0.26 14.96 8.31 -92.71 -0.77 14.19 15 Total: -1.00 -75.81 240.70 5.47 -70.33 By element: Atomic # 1 Polarization: -1.02 SS G_CDS: 1.17 Total: 0.14 kcal Atomic # 6 Polarization: 13.28 SS G_CDS: 6.64 Total: 19.92 kcal Atomic # 7 Polarization: -100.94 SS G_CDS: -4.28 Total: -105.22 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -0.08 Total: -30.16 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -75.81 5.47 -70.33 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306189974.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.393 kcal (2) G-P(sol) polarization free energy of solvation -75.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds