Wall clock time and date at job start Sun Mar 29 2020 21:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00249 * 2 1 4 4 H 1.48504 * 109.46972 * 239.99887 * 3 2 1 5 5 H 1.48498 * 109.47225 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47375 * 119.99871 * 3 2 1 7 7 C 1.37881 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00046 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99911 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47245 * 179.97438 * 9 7 2 11 11 C 1.50181 * 110.99946 * 303.77552 * 10 9 7 12 12 C 1.55190 * 106.38603 * 214.49766 * 11 10 9 13 13 C 1.51500 * 103.47114 * 354.48708 * 12 11 10 14 14 H 1.09002 * 111.06751 * 274.74243 * 13 12 11 15 15 C 1.51852 * 122.62456 * 139.99350 * 13 12 11 16 16 C 1.56199 * 101.98129 * 206.92506 * 15 13 12 17 17 C 1.55864 * 105.84985 * 25.20121 * 16 15 13 18 18 C 1.43873 * 111.00095 * 190.00035 * 10 9 7 19 19 H 1.09002 * 107.89606 * 53.56952 * 18 10 9 20 20 H 0.96999 * 119.99851 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.47426 * 59.99685 * 9 7 2 22 22 H 1.09002 * 109.47073 * 299.99858 * 9 7 2 23 23 H 1.09000 * 110.07383 * 334.12190 * 11 10 9 24 24 H 1.09004 * 110.06882 * 95.64657 * 11 10 9 25 25 H 1.09002 * 110.99612 * 235.74756 * 12 11 10 26 26 H 1.08999 * 110.07993 * 112.78898 * 12 11 10 27 27 H 1.09001 * 110.93054 * 325.09608 * 15 13 12 28 28 H 1.09007 * 110.92964 * 88.75873 * 15 13 12 29 29 H 1.09003 * 110.17077 * 266.10809 * 16 15 13 30 30 H 1.09000 * 110.23690 * 144.32928 * 16 15 13 31 31 H 1.09002 * 110.47498 * 247.75792 * 17 16 15 32 32 H 1.08999 * 110.58848 * 125.20024 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 3.1478 -3.5183 -1.1649 12 6 3.4482 -4.9750 -1.6079 13 6 2.7512 -5.8144 -0.5568 14 1 3.3886 -5.9584 0.3156 15 6 1.9933 -7.0860 -0.8950 16 6 0.9439 -7.1549 0.2599 17 6 0.7462 -5.6865 0.7436 18 6 1.5352 -4.8672 -0.2327 19 1 0.9504 -4.7685 -1.1472 20 1 -0.4850 0.8400 -0.0004 21 1 0.6246 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 2.6808 -2.9625 -1.9780 24 1 4.0720 -3.0282 -0.8587 25 1 4.5206 -5.1700 -1.6073 26 1 3.0226 -5.1616 -2.5939 27 1 1.5010 -7.0000 -1.8637 28 1 2.6553 -7.9518 -0.8717 29 1 1.3223 -7.7715 1.0753 30 1 0.0017 -7.5588 -0.1104 31 1 1.1397 -5.5610 1.7523 32 1 -0.3076 -5.4102 0.7093 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306403887.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:25:58 Heat of formation + Delta-G solvation = -17.092890 kcal Electronic energy + Delta-G solvation = -12663.933565 eV Core-core repulsion = 10623.154445 eV Total energy + Delta-G solvation = -2040.779120 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.21811 -36.53510 -34.71386 -32.70010 -29.54332 -27.74158 -27.22204 -24.37486 -22.13402 -21.05142 -20.37067 -18.34982 -17.11081 -16.75984 -15.97088 -15.68771 -15.38895 -14.60169 -14.16059 -13.88266 -13.55839 -13.31640 -12.82543 -12.72675 -12.58694 -12.26974 -12.05728 -11.95515 -11.68306 -11.47036 -11.33025 -11.21536 -10.79627 -10.66937 -9.16847 -8.25914 -6.37371 1.37292 1.41523 1.49600 2.36872 3.00615 3.06863 3.47742 3.85428 4.02840 4.21282 4.24192 4.35648 4.53696 4.61200 4.66881 4.78119 4.88472 4.94542 5.00484 5.07300 5.07610 5.15521 5.21337 5.29257 5.39873 5.45027 5.57411 5.61467 5.92445 6.18431 6.62860 6.78415 7.32972 8.86106 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.062574 B = 0.009268 C = 0.008388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.359223 B = 3020.309223 C = 3337.323027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.974 3.026 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.532 4.532 8 H 0.064 0.936 9 C 0.201 3.799 10 N -0.510 5.510 11 C 0.046 3.954 12 C -0.109 4.109 13 C -0.097 4.097 14 H 0.083 0.917 15 C -0.102 4.102 16 C -0.107 4.107 17 C -0.107 4.107 18 C 0.034 3.966 19 H 0.001 0.999 20 H 0.266 0.734 21 H -0.043 1.043 22 H -0.002 1.002 23 H 0.024 0.976 24 H 0.069 0.931 25 H 0.093 0.907 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.143 -12.791 -2.151 13.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.798 3.202 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.570 4.570 8 H 0.082 0.918 9 C 0.074 3.926 10 N -0.233 5.233 11 C -0.081 4.081 12 C -0.146 4.146 13 C -0.116 4.116 14 H 0.102 0.898 15 C -0.140 4.140 16 C -0.145 4.145 17 C -0.145 4.145 18 C -0.076 4.076 19 H 0.019 0.981 20 H 0.074 0.926 21 H -0.026 1.026 22 H 0.017 0.983 23 H 0.043 0.957 24 H 0.087 0.913 25 H 0.111 0.889 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.112 0.888 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.251 -12.642 -1.629 13.786 hybrid contribution -0.712 1.475 -0.680 1.774 sum 4.539 -11.167 -2.309 12.274 Atomic orbital electron populations 1.70095 1.07891 1.28117 1.51380 1.26012 0.95828 1.03522 0.94487 0.85369 0.78150 0.77473 0.79243 1.19046 1.20542 1.19149 1.21467 0.93643 0.91160 1.50746 0.91767 1.19505 0.90507 0.89681 0.92887 1.64298 1.16936 1.01561 1.40532 1.23362 0.96433 0.97248 0.91074 1.21871 1.01859 0.92544 0.98375 1.22345 0.95415 0.94628 0.99179 0.89823 1.21949 0.97216 0.96499 0.98315 1.22817 0.99633 0.93623 0.98427 1.21431 0.98277 0.95965 0.98803 1.22342 0.96810 0.91485 0.96968 0.98062 0.92558 1.02571 0.98345 0.95731 0.91284 0.88882 0.91159 0.91630 0.88821 0.89580 0.90568 0.91790 0.93305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.38 13.29 21.45 0.28 -58.10 16 2 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 3 Si 0.97 45.44 29.54 68.60 2.03 47.47 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 7 C -0.53 -31.71 8.53 25.60 0.22 -31.50 16 8 H 0.06 3.71 7.09 -2.91 -0.02 3.69 16 9 C 0.20 11.60 4.68 85.56 0.40 12.00 16 10 N -0.51 -24.11 5.40 -865.72 -4.67 -28.78 16 11 C 0.05 1.91 5.57 86.41 0.48 2.39 16 12 C -0.11 -3.27 6.67 30.85 0.21 -3.06 16 13 C -0.10 -2.86 3.22 -10.07 -0.03 -2.89 16 14 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 15 C -0.10 -2.31 6.62 31.33 0.21 -2.10 16 16 C -0.11 -2.48 6.94 32.70 0.23 -2.25 16 17 C -0.11 -3.53 6.72 30.59 0.21 -3.33 16 18 C 0.03 1.34 2.09 46.08 0.10 1.43 16 19 H 0.00 0.06 7.69 -2.39 -0.02 0.04 16 20 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 21 H -0.04 -2.72 7.90 -2.39 -0.02 -2.74 16 22 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 23 H 0.02 1.11 7.72 -2.39 -0.02 1.09 16 24 H 0.07 2.80 7.87 -2.39 -0.02 2.79 16 25 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 29 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -67.63 254.02 1.17 -66.46 By element: Atomic # 1 Polarization: 0.76 SS G_CDS: 1.06 Total: 1.82 kcal Atomic # 6 Polarization: -31.34 SS G_CDS: 2.47 Total: -28.87 kcal Atomic # 7 Polarization: -82.49 SS G_CDS: -4.39 Total: -86.88 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -67.63 1.17 -66.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306403887.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.365 kcal (2) G-P(sol) polarization free energy of solvation -67.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds