Wall clock time and date at job start Sun Mar 29 2020 21:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99924 * 2 1 4 4 H 1.48502 * 109.46901 * 239.99996 * 3 2 1 5 5 H 1.48497 * 109.47217 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46941 * 119.99958 * 3 2 1 7 7 C 1.37879 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99890 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00107 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47091 * 180.02562 * 9 7 2 11 11 C 1.49397 * 111.19758 * 55.62592 * 10 9 7 12 12 C 1.55811 * 106.46250 * 144.97715 * 11 10 9 13 13 C 1.51485 * 103.17637 * 6.40411 * 12 11 10 14 14 H 1.08996 * 111.06357 * 84.69643 * 13 12 11 15 15 C 1.51856 * 122.64160 * 219.44643 * 13 12 11 16 16 C 1.56470 * 101.97536 * 153.17225 * 15 13 12 17 17 C 1.55866 * 105.71660 * 334.68309 * 16 15 13 18 18 C 1.43880 * 111.00334 * 169.99833 * 10 9 7 19 19 H 1.09000 * 107.90553 * 306.45385 * 18 10 9 20 20 H 0.96996 * 120.00394 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.47144 * 60.00501 * 9 7 2 22 22 H 1.08997 * 109.47466 * 300.00350 * 9 7 2 23 23 H 1.09008 * 109.78454 * 25.86401 * 11 10 9 24 24 H 1.08998 * 110.29534 * 264.37095 * 11 10 9 25 25 H 1.09002 * 110.67728 * 247.97735 * 12 11 10 26 26 H 1.09003 * 110.81899 * 124.89651 * 12 11 10 27 27 H 1.09003 * 110.92429 * 271.26244 * 15 13 12 28 28 H 1.09002 * 110.93121 * 34.91869 * 15 13 12 29 29 H 1.08989 * 110.20116 * 215.65204 * 16 15 13 30 30 H 1.08999 * 110.28211 * 93.75388 * 16 15 13 31 31 H 1.09002 * 110.47724 * 234.90518 * 17 16 15 32 32 H 1.09004 * 110.47926 * 112.41648 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 3.1544 -3.5153 1.1491 12 6 3.4483 -4.9751 1.6079 13 6 2.7516 -5.8143 0.5567 14 1 3.3890 -5.9577 -0.3158 15 6 1.9939 -7.0863 0.8940 16 6 0.9446 -7.1562 -0.2645 17 6 0.7469 -5.6864 -0.7443 18 6 1.5353 -4.8673 0.2327 19 1 0.9501 -4.7687 1.1470 20 1 -0.4850 0.8400 -0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6246 -2.5571 0.8896 23 1 2.6920 -2.9540 1.9611 24 1 4.0779 -3.0286 0.8357 25 1 3.0226 -5.1618 2.5938 26 1 4.5204 -5.1722 1.6094 27 1 2.6562 -7.9518 0.8706 28 1 1.5013 -7.0009 1.8626 29 1 0.0024 -7.5609 0.1049 30 1 1.3237 -7.7704 -1.0812 31 1 -0.3074 -5.4122 -0.7087 32 1 1.1393 -5.5586 -1.7532 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306403889.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:00 Heat of formation + Delta-G solvation = -17.142031 kcal Electronic energy + Delta-G solvation = -12664.035856 eV Core-core repulsion = 10623.254605 eV Total energy + Delta-G solvation = -2040.781251 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.22079 -36.54713 -34.71079 -32.67978 -29.53955 -27.72545 -27.23542 -24.39137 -22.13809 -21.05882 -20.37049 -18.34834 -17.11431 -16.76414 -15.97060 -15.68679 -15.38876 -14.59722 -14.15791 -13.88508 -13.56050 -13.31631 -12.83241 -12.73473 -12.58856 -12.26906 -12.04770 -11.95681 -11.67186 -11.47246 -11.33555 -11.22342 -10.79560 -10.67015 -9.14896 -8.25945 -6.37442 1.37262 1.41502 1.49579 2.36828 3.01102 3.06787 3.47068 3.85151 4.02906 4.20000 4.24646 4.35826 4.53813 4.60763 4.66428 4.77999 4.88839 4.94317 5.00704 5.07314 5.07806 5.15454 5.21324 5.29288 5.40263 5.45066 5.57428 5.61425 5.93201 6.20622 6.63370 6.78516 7.32933 8.86069 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.062592 B = 0.009268 C = 0.008388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.233699 B = 3020.375969 C = 3337.492382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.974 3.026 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.532 4.532 8 H 0.064 0.936 9 C 0.202 3.798 10 N -0.513 5.513 11 C 0.049 3.951 12 C -0.109 4.109 13 C -0.097 4.097 14 H 0.083 0.917 15 C -0.102 4.102 16 C -0.107 4.107 17 C -0.107 4.107 18 C 0.036 3.964 19 H 0.001 0.999 20 H 0.266 0.734 21 H -0.001 1.001 22 H -0.044 1.044 23 H 0.022 0.978 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.148 -12.788 2.121 13.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.798 3.202 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.571 4.571 8 H 0.082 0.918 9 C 0.075 3.925 10 N -0.236 5.236 11 C -0.079 4.079 12 C -0.147 4.147 13 C -0.116 4.116 14 H 0.102 0.898 15 C -0.140 4.140 16 C -0.145 4.145 17 C -0.145 4.145 18 C -0.074 4.074 19 H 0.019 0.981 20 H 0.074 0.926 21 H 0.017 0.983 22 H -0.026 1.026 23 H 0.041 0.959 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.067 0.933 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.252 -12.641 1.605 13.782 hybrid contribution -0.704 1.476 0.682 1.772 sum 4.547 -11.165 2.287 12.270 Atomic orbital electron populations 1.70094 1.07889 1.28125 1.51372 1.26013 0.95828 1.03522 0.94481 0.85370 0.78151 0.77472 0.79244 1.19140 1.20539 1.19050 1.21472 0.93650 0.91171 1.50762 0.91757 1.19496 0.90474 0.89606 0.92882 1.63894 1.16677 1.01624 1.41403 1.23322 0.96311 0.97169 0.91100 1.21978 1.01872 0.92521 0.98310 1.22346 0.95435 0.94643 0.99203 0.89821 1.21993 0.97229 0.96476 0.98293 1.22866 0.99630 0.93596 0.98397 1.21435 0.98279 0.95973 0.98807 1.22327 0.96803 0.91369 0.96930 0.98086 0.92554 0.98325 1.02594 0.95932 0.91208 0.91105 0.88924 0.88845 0.91619 0.90561 0.89553 0.93317 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.38 13.29 21.45 0.28 -58.09 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 3 Si 0.97 45.43 29.54 68.60 2.03 47.46 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.53 -31.74 8.51 25.60 0.22 -31.52 16 8 H 0.06 3.71 7.06 -2.91 -0.02 3.69 16 9 C 0.20 11.67 4.69 85.56 0.40 12.07 16 10 N -0.51 -24.23 5.35 -866.61 -4.64 -28.87 16 11 C 0.05 2.00 5.58 86.79 0.48 2.49 16 12 C -0.11 -3.28 6.70 31.07 0.21 -3.07 16 13 C -0.10 -2.88 3.21 -10.07 -0.03 -2.91 16 14 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 15 C -0.10 -2.31 6.63 31.43 0.21 -2.10 16 16 C -0.11 -2.47 6.96 32.80 0.23 -2.24 16 17 C -0.11 -3.54 6.72 30.59 0.21 -3.33 16 18 C 0.04 1.40 2.09 46.08 0.10 1.50 16 19 H 0.00 0.05 7.70 -2.39 -0.02 0.03 16 20 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 21 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 22 H -0.04 -2.74 7.90 -2.39 -0.02 -2.76 16 23 H 0.02 1.02 7.68 -2.38 -0.02 1.00 16 24 H 0.07 2.84 7.86 -2.39 -0.02 2.82 16 25 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 Total: -1.00 -67.63 253.98 1.21 -66.41 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: 1.06 Total: 1.78 kcal Atomic # 6 Polarization: -31.16 SS G_CDS: 2.48 Total: -28.68 kcal Atomic # 7 Polarization: -82.61 SS G_CDS: -4.35 Total: -86.97 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -67.63 1.21 -66.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306403889.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.272 kcal (2) G-P(sol) polarization free energy of solvation -67.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds