Wall clock time and date at job start Sun Mar 29 2020 21:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34841 * 126.58810 * 2 1 4 4 C 1.36674 * 106.82472 * 179.97438 * 3 2 1 5 5 C 1.47440 * 125.77585 * 180.26549 * 4 3 2 6 6 O 1.21624 * 120.00293 * 359.71344 * 5 4 3 7 7 N 1.34769 * 119.99636 * 179.71383 * 5 4 3 8 8 C 1.36959 * 120.00040 * 179.97438 * 7 5 4 9 9 H 1.08002 * 120.00037 * 0.02562 * 8 7 5 10 10 C 1.38993 * 120.00268 * 179.97438 * 8 7 5 11 11 N 1.31401 * 119.99751 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00022 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46963 * 60.00267 * 12 10 8 14 14 H 1.48501 * 109.46873 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47420 * 300.00306 * 12 10 8 16 16 N 1.34424 * 108.44053 * 359.97438 * 4 3 2 17 17 N 1.28749 * 109.53094 * 0.02562 * 16 4 3 18 18 H 1.09001 * 109.47231 * 269.99772 * 1 2 3 19 19 H 1.08999 * 109.47767 * 30.00318 * 1 2 3 20 20 H 1.08999 * 109.46964 * 150.00177 * 1 2 3 21 21 H 1.08001 * 126.59105 * 359.97392 * 3 2 1 22 22 H 0.97001 * 120.00431 * 0.02562 * 7 5 4 23 23 H 0.97001 * 120.00151 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2687 1.0827 0.0000 4 6 3.5549 0.6205 0.0006 5 6 4.7706 1.4548 0.0063 6 8 4.6760 2.6674 0.0059 7 7 5.9865 0.8737 0.0121 8 6 7.1158 1.6486 0.0170 9 1 7.0319 2.7253 0.0165 10 6 8.3699 1.0493 0.0235 11 7 8.4720 -0.2607 0.0245 12 14 9.9101 2.1062 0.0293 13 1 9.9165 2.9649 1.2409 14 1 11.1103 1.2318 0.0365 15 1 9.9278 2.9621 -1.1841 16 7 3.5239 -0.7233 0.0015 17 7 2.3009 -1.1256 0.0010 18 1 -0.3634 0.0000 1.0277 19 1 -0.3634 0.8899 -0.5139 20 1 -0.3633 -0.8900 -0.5138 21 1 1.9561 2.1165 -0.0004 22 1 6.0620 -0.0934 0.0121 23 1 9.3472 -0.6790 0.0294 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306415286.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:15 Heat of formation + Delta-G solvation = 58.649107 kcal Electronic energy + Delta-G solvation = -11708.421783 eV Core-core repulsion = 9366.127733 eV Total energy + Delta-G solvation = -2342.294050 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 196.070 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.59140 -37.78950 -34.26366 -33.96147 -31.24153 -30.27682 -27.66327 -25.14998 -22.50455 -21.69220 -19.52182 -18.01072 -17.02367 -15.80722 -15.41244 -14.64068 -14.29643 -13.77066 -13.66243 -13.33591 -12.74694 -12.62043 -11.61819 -11.56819 -11.07333 -10.73960 -10.43616 -10.21069 -9.98126 -9.55395 -8.67675 -8.61495 -7.99224 -6.44929 -3.81856 1.59573 2.43036 2.47838 3.25509 3.26425 3.30792 4.14721 4.35963 4.49107 4.83004 4.95470 4.99250 5.20941 5.36126 5.48291 5.77832 5.92059 6.64759 6.74823 7.51424 8.01817 8.42974 8.63490 9.12359 9.53604 10.04751 10.71329 Molecular weight = 196.07amu Principal moments of inertia in cm(-1) A = 0.089412 B = 0.008236 C = 0.007573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 313.082921 B = 3398.686423 C = 3696.619998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.375 5.375 3 C 0.062 3.938 4 C -0.058 4.058 5 C 0.504 3.496 6 O -0.601 6.601 7 N -0.530 5.530 8 C -0.301 4.301 9 H 0.108 0.892 10 C 0.025 3.975 11 N -0.885 5.885 12 Si 0.937 3.063 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.272 1.272 16 N -0.213 5.213 17 N -0.086 5.086 18 H 0.082 0.918 19 H 0.092 0.908 20 H 0.094 0.906 21 H 0.199 0.801 22 H 0.403 0.597 23 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.155 0.275 -0.082 12.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.162 5.162 3 C -0.093 4.093 4 C -0.198 4.198 5 C 0.289 3.711 6 O -0.488 6.488 7 N -0.162 5.162 8 C -0.431 4.431 9 H 0.126 0.874 10 C -0.179 4.179 11 N -0.524 5.524 12 Si 0.763 3.237 13 H -0.197 1.197 14 H -0.208 1.208 15 H -0.197 1.197 16 N -0.086 5.086 17 N -0.066 5.066 18 H 0.101 0.899 19 H 0.111 0.889 20 H 0.113 0.887 21 H 0.215 0.785 22 H 0.237 0.763 23 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.002 -0.611 -0.081 12.018 hybrid contribution 0.493 0.914 0.015 1.039 sum -11.509 0.303 -0.065 11.513 Atomic orbital electron populations 1.22008 0.73672 1.05070 1.04055 1.50250 1.08451 1.06077 1.51469 1.23228 0.90407 0.94374 1.01322 1.22080 0.95612 0.89697 1.12425 1.16350 0.81570 0.86367 0.86823 1.90608 1.86079 1.12948 1.59133 1.41774 1.03965 1.10308 1.60194 1.19777 0.82830 0.92832 1.47696 0.87449 1.25417 0.99670 0.96101 0.96720 1.69648 1.26082 1.08739 1.47920 0.85831 0.79589 0.79085 0.79205 1.19685 1.20825 1.19677 1.74673 1.12053 1.11235 1.10626 1.81866 0.93989 1.06729 1.24039 0.89904 0.88945 0.88690 0.78467 0.76269 0.91421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.74 11.51 59.84 0.69 1.43 14 2 N -0.37 -5.49 4.03 -67.83 -0.27 -5.76 14 3 C 0.06 1.04 11.31 -16.80 -0.19 0.85 14 4 C -0.06 -1.27 6.99 -83.55 -0.58 -1.85 14 5 C 0.50 13.06 7.77 -12.52 -0.10 12.96 14 6 O -0.60 -16.73 16.44 5.26 0.09 -16.64 14 7 N -0.53 -14.59 5.28 -11.95 -0.06 -14.65 14 8 C -0.30 -8.62 9.68 -14.98 -0.14 -8.77 14 9 H 0.11 3.12 7.15 -52.49 -0.38 2.75 14 10 C 0.02 0.68 5.50 -17.46 -0.10 0.58 14 11 N -0.88 -24.76 13.05 55.50 0.72 -24.04 14 12 Si 0.94 21.01 29.55 -169.99 -5.02 15.98 14 13 H -0.27 -6.01 7.11 56.52 0.40 -5.61 14 14 H -0.28 -6.18 7.11 56.52 0.40 -5.78 14 15 H -0.27 -6.01 7.11 56.52 0.40 -5.61 14 16 N -0.21 -4.63 12.03 32.85 0.40 -4.23 14 17 N -0.09 -1.62 13.78 60.35 0.83 -0.78 14 18 H 0.08 0.52 8.14 -51.93 -0.42 0.10 14 19 H 0.09 0.48 8.14 -51.93 -0.42 0.06 14 20 H 0.09 0.64 8.14 -51.93 -0.42 0.21 14 21 H 0.20 2.65 8.06 -52.49 -0.42 2.23 14 22 H 0.40 11.08 7.58 -40.82 -0.31 10.77 14 23 H 0.28 7.22 8.31 -40.82 -0.34 6.88 14 LS Contribution 223.78 15.07 3.37 3.37 Total: -1.00 -33.67 223.78 -1.88 -35.55 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -1.51 Total: 6.00 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -0.42 Total: 5.20 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: 1.61 Total: -49.47 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: 0.09 Total: -16.64 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -33.67 -1.88 -35.55 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306415286.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.199 kcal (2) G-P(sol) polarization free energy of solvation -33.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds