Wall clock time and date at job start Sun Mar 29 2020 21:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34841 * 126.58810 * 2 1 4 4 C 1.36674 * 106.82472 * 179.97438 * 3 2 1 5 5 C 1.47440 * 125.77585 * 180.26549 * 4 3 2 6 6 O 1.21624 * 120.00293 * 359.71344 * 5 4 3 7 7 N 1.34769 * 119.99636 * 179.71383 * 5 4 3 8 8 C 1.36959 * 120.00040 * 179.97438 * 7 5 4 9 9 H 1.08002 * 120.00037 * 0.02562 * 8 7 5 10 10 C 1.38993 * 120.00268 * 179.97438 * 8 7 5 11 11 N 1.31401 * 119.99751 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00022 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46963 * 60.00267 * 12 10 8 14 14 H 1.48501 * 109.46873 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47420 * 300.00306 * 12 10 8 16 16 N 1.34424 * 108.44053 * 359.97438 * 4 3 2 17 17 N 1.28749 * 109.53094 * 0.02562 * 16 4 3 18 18 H 1.09001 * 109.47231 * 269.99772 * 1 2 3 19 19 H 1.08999 * 109.47767 * 30.00318 * 1 2 3 20 20 H 1.08999 * 109.46964 * 150.00177 * 1 2 3 21 21 H 1.08001 * 126.59105 * 359.97392 * 3 2 1 22 22 H 0.97001 * 120.00431 * 0.02562 * 7 5 4 23 23 H 0.97001 * 120.00151 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2687 1.0827 0.0000 4 6 3.5549 0.6205 0.0006 5 6 4.7706 1.4548 0.0063 6 8 4.6760 2.6674 0.0059 7 7 5.9865 0.8737 0.0121 8 6 7.1158 1.6486 0.0170 9 1 7.0319 2.7253 0.0165 10 6 8.3699 1.0493 0.0235 11 7 8.4720 -0.2607 0.0245 12 14 9.9101 2.1062 0.0293 13 1 9.9165 2.9649 1.2409 14 1 11.1103 1.2318 0.0365 15 1 9.9278 2.9621 -1.1841 16 7 3.5239 -0.7233 0.0015 17 7 2.3009 -1.1256 0.0010 18 1 -0.3634 0.0000 1.0277 19 1 -0.3634 0.8899 -0.5139 20 1 -0.3633 -0.8900 -0.5138 21 1 1.9561 2.1165 -0.0004 22 1 6.0620 -0.0934 0.0121 23 1 9.3472 -0.6790 0.0294 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306415286.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:15 Heat of formation + Delta-G solvation = 31.459507 kcal Electronic energy + Delta-G solvation = -11709.600812 eV Core-core repulsion = 9366.127733 eV Total energy + Delta-G solvation = -2343.473079 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 196.070 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.03574 -39.81314 -36.06632 -35.47339 -33.31030 -31.79243 -28.75456 -27.09651 -24.21781 -22.99335 -21.26254 -20.06357 -18.61367 -17.09363 -17.07001 -16.52761 -15.94250 -15.41545 -15.31875 -14.80904 -14.00248 -13.84949 -13.53253 -13.01208 -12.90993 -12.47480 -12.14811 -12.04812 -11.55299 -11.20981 -10.67757 -10.23319 -10.05495 -8.50318 -5.99162 0.26061 0.80017 1.32001 1.44074 1.50252 1.57425 2.29652 2.43580 3.03186 3.27629 3.46828 3.75608 4.09856 4.20833 4.42762 4.63071 4.71221 4.94790 5.37417 5.59765 5.92465 6.47669 6.97069 7.06300 7.47514 7.97843 8.66900 Molecular weight = 196.07amu Principal moments of inertia in cm(-1) A = 0.089412 B = 0.008236 C = 0.007573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 313.082921 B = 3398.686423 C = 3696.619998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.351 5.351 3 C 0.096 3.904 4 C -0.103 4.103 5 C 0.509 3.491 6 O -0.626 6.626 7 N -0.548 5.548 8 C -0.340 4.340 9 H 0.094 0.906 10 C -0.015 4.015 11 N -0.915 5.915 12 Si 1.008 2.992 13 H -0.266 1.266 14 H -0.270 1.270 15 H -0.266 1.266 16 N -0.246 5.246 17 N -0.098 5.098 18 H 0.108 0.892 19 H 0.130 0.870 20 H 0.110 0.890 21 H 0.236 0.764 22 H 0.398 0.602 23 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.774 0.890 -0.088 13.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.138 5.138 3 C -0.062 4.062 4 C -0.244 4.244 5 C 0.295 3.705 6 O -0.514 6.514 7 N -0.181 5.181 8 C -0.470 4.470 9 H 0.111 0.889 10 C -0.216 4.216 11 N -0.555 5.555 12 Si 0.829 3.171 13 H -0.191 1.191 14 H -0.195 1.195 15 H -0.191 1.191 16 N -0.118 5.118 17 N -0.079 5.079 18 H 0.126 0.874 19 H 0.148 0.852 20 H 0.128 0.872 21 H 0.252 0.748 22 H 0.232 0.768 23 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.681 -0.031 -0.087 13.681 hybrid contribution 0.688 0.705 0.020 0.985 sum -12.993 0.674 -0.067 13.011 Atomic orbital electron populations 1.22710 0.69202 1.07760 1.06541 1.50685 1.10577 1.04327 1.48164 1.23658 0.88749 0.96085 0.97686 1.21687 0.95761 0.89946 1.16995 1.16913 0.82376 0.86562 0.84605 1.90560 1.86866 1.14205 1.59770 1.41855 1.04574 1.09951 1.61675 1.19876 0.84197 0.92506 1.50401 0.88857 1.26370 1.02376 0.97455 0.95426 1.69737 1.27164 1.10209 1.48343 0.84786 0.75457 0.77439 0.79383 1.19081 1.19482 1.19064 1.74637 1.13824 1.11527 1.11836 1.81748 0.93565 1.08214 1.24336 0.87403 0.85222 0.87186 0.74788 0.76766 0.90895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 11.51 127.77 1.47 2.30 14 2 N -0.35 -9.12 4.03 -368.52 -1.49 -10.61 14 3 C 0.10 2.95 11.31 83.86 0.95 3.90 14 4 C -0.10 -4.47 6.99 40.81 0.29 -4.19 14 5 C 0.51 26.98 7.77 86.67 0.67 27.65 14 6 O -0.63 -35.33 16.44 -4.11 -0.07 -35.40 14 7 N -0.55 -31.35 5.28 -309.96 -1.64 -32.99 14 8 C -0.34 -20.14 9.68 84.07 0.81 -19.33 14 9 H 0.09 5.64 7.15 -2.91 -0.02 5.62 14 10 C -0.02 -0.85 5.50 84.94 0.47 -0.39 14 11 N -0.92 -52.24 13.05 21.67 0.28 -51.96 14 12 Si 1.01 43.32 29.55 68.60 2.03 45.34 14 13 H -0.27 -11.11 7.11 99.48 0.71 -10.41 14 14 H -0.27 -10.96 7.11 99.48 0.71 -10.25 14 15 H -0.27 -11.10 7.11 99.48 0.71 -10.40 14 16 N -0.25 -10.73 12.03 -50.00 -0.60 -11.33 14 17 N -0.10 -3.55 13.78 37.02 0.51 -3.04 14 18 H 0.11 0.78 8.14 -2.39 -0.02 0.77 14 19 H 0.13 0.57 8.14 -2.39 -0.02 0.55 14 20 H 0.11 0.97 8.14 -2.39 -0.02 0.95 14 21 H 0.24 5.32 8.06 -2.91 -0.02 5.29 14 22 H 0.40 22.98 7.58 -92.71 -0.70 22.28 14 23 H 0.28 14.87 8.31 -92.71 -0.77 14.10 14 Total: -1.00 -75.76 223.78 4.23 -71.52 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.55 Total: 18.50 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: 4.66 Total: 9.95 kcal Atomic # 7 Polarization: -106.99 SS G_CDS: -2.93 Total: -109.93 kcal Atomic # 8 Polarization: -35.33 SS G_CDS: -0.07 Total: -35.40 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -75.76 4.23 -71.52 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306415286.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.983 kcal (2) G-P(sol) polarization free energy of solvation -75.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds