Wall clock time and date at job start Sun Mar 29 2020 22:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47037 * 2 1 4 4 C 1.52994 * 109.47207 * 119.99970 * 2 1 3 5 5 H 1.09008 * 113.04512 * 174.05620 * 4 2 1 6 6 C 1.53949 * 113.77343 * 305.81229 * 4 2 1 7 7 C 1.53942 * 86.29195 * 137.90482 * 6 4 2 8 8 N 1.47583 * 86.12030 * 336.39835 * 7 6 4 9 9 C 1.34771 * 134.49462 * 204.64271 * 8 7 6 10 10 O 1.21688 * 120.00422 * 175.15923 * 9 8 7 11 11 C 1.46376 * 119.99861 * 355.15851 * 9 8 7 12 12 H 1.08001 * 120.00010 * 0.02562 * 11 9 8 13 13 C 1.40044 * 120.00032 * 179.97438 * 11 9 8 14 14 N 1.30670 * 120.00284 * 0.02562 * 13 11 9 15 15 Si 1.86807 * 120.00327 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46917 * 89.99777 * 15 13 11 17 17 H 1.48500 * 109.47387 * 210.00377 * 15 13 11 18 18 H 1.48506 * 109.46862 * 330.00301 * 15 13 11 19 19 H 1.08999 * 109.47404 * 305.16071 * 1 2 3 20 20 H 1.09002 * 109.47202 * 65.16119 * 1 2 3 21 21 H 1.08995 * 109.47175 * 185.16271 * 1 2 3 22 22 H 1.08994 * 109.47293 * 240.00352 * 2 1 3 23 23 H 1.09001 * 109.46972 * 179.97438 * 3 2 1 24 24 H 1.08992 * 109.47324 * 300.00162 * 3 2 1 25 25 H 1.09005 * 109.46859 * 60.00530 * 3 2 1 26 26 H 1.09002 * 113.73816 * 23.55937 * 6 4 2 27 27 H 1.08996 * 113.73994 * 252.25839 * 6 4 2 28 28 H 1.09004 * 113.76548 * 90.69540 * 7 6 4 29 29 H 1.08991 * 113.77275 * 222.09178 * 7 6 4 30 30 H 0.96997 * 120.00504 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 3.1228 -0.8460 1.2576 6 6 1.4696 -0.1617 2.5651 7 6 1.3204 -1.6286 3.0076 8 7 1.2966 -1.9555 1.5687 9 6 0.7966 -2.9725 0.8393 10 8 0.8530 -2.9352 -0.3757 11 6 0.1857 -4.1220 1.5085 12 1 0.1352 -4.1550 2.5869 13 6 -0.3343 -5.1786 0.7506 14 7 -0.2737 -5.1386 -0.5541 15 14 -1.1146 -6.6454 1.6047 16 1 -2.5660 -6.3940 1.7929 17 1 -0.9264 -7.8607 0.7723 18 1 -0.4716 -6.8473 2.9280 19 1 -0.3634 0.5918 0.8401 20 1 -0.3634 0.4317 -0.9326 21 1 -0.3633 -1.0234 0.0925 22 1 1.8933 -0.5137 -0.8900 23 1 3.1300 1.4425 0.0005 24 1 1.6766 1.9564 -0.8899 25 1 1.6766 1.9563 0.8901 26 1 0.5197 0.3593 2.4453 27 1 2.1940 0.4025 3.1526 28 1 2.1919 -2.0199 3.5326 29 1 0.3826 -1.8392 3.5216 30 1 -0.6335 -5.8705 -1.0791 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306422614.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:51 Heat of formation + Delta-G solvation = -37.539587 kcal Electronic energy + Delta-G solvation = -13009.796874 eV Core-core repulsion = 10804.986545 eV Total energy + Delta-G solvation = -2204.810329 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.91845 -37.80373 -35.11652 -34.60491 -30.24005 -28.14957 -27.77563 -26.45162 -23.11146 -21.83559 -19.73059 -18.34310 -17.49077 -16.86309 -16.21249 -15.87474 -15.31306 -14.33361 -14.28794 -13.91895 -13.43310 -13.13859 -13.07965 -12.84013 -12.71290 -12.49705 -12.42788 -12.06278 -12.03373 -11.70452 -11.59317 -11.04930 -10.93827 -9.69634 -9.00928 -8.27274 -6.83740 1.35769 1.38021 1.52675 2.20855 2.47350 2.72912 3.60926 3.67798 4.06928 4.12711 4.31289 4.40023 4.53039 4.69956 4.79763 4.83584 4.84676 4.94158 5.09879 5.14176 5.22181 5.30161 5.34836 5.44551 5.59477 5.66004 6.00839 6.52428 6.87216 7.70391 8.50986 8.71103 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.055974 B = 0.010805 C = 0.009660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.115423 B = 2590.759273 C = 2897.889588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.090 4.090 3 C -0.127 4.127 4 C 0.122 3.878 5 H 0.074 0.926 6 C -0.120 4.120 7 C 0.102 3.898 8 N -0.676 5.676 9 C 0.563 3.437 10 O -0.622 6.622 11 C -0.571 4.571 12 H 0.078 0.922 13 C 0.028 3.972 14 N -0.823 5.823 15 Si 0.995 3.005 16 H -0.261 1.261 17 H -0.271 1.271 18 H -0.251 1.251 19 H 0.070 0.930 20 H 0.042 0.958 21 H 0.022 0.978 22 H 0.029 0.971 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.111 0.889 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.245 9.232 8.050 12.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.110 4.110 3 C -0.185 4.185 4 C 0.019 3.981 5 H 0.092 0.908 6 C -0.158 4.158 7 C -0.021 4.021 8 N -0.415 5.415 9 C 0.370 3.630 10 O -0.509 6.509 11 C -0.608 4.608 12 H 0.096 0.904 13 C -0.186 4.186 14 N -0.453 5.453 15 Si 0.815 3.185 16 H -0.185 1.185 17 H -0.196 1.196 18 H -0.174 1.174 19 H 0.089 0.911 20 H 0.061 0.939 21 H 0.042 0.958 22 H 0.047 0.953 23 H 0.082 0.918 24 H 0.076 0.924 25 H 0.095 0.905 26 H 0.110 0.890 27 H 0.129 0.871 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.166 9.009 7.110 11.679 hybrid contribution -0.295 -1.105 -0.233 1.167 sum 1.870 7.904 6.877 10.642 Atomic orbital electron populations 1.21690 0.95898 1.00533 1.00658 1.21040 0.95879 0.97313 0.96744 1.21673 1.01220 0.92877 1.02737 1.22830 0.95569 0.83906 0.95815 0.90792 1.23517 1.02528 0.95288 0.94446 1.22995 1.01291 0.94005 0.83777 1.50289 1.59521 1.23103 1.08632 1.18206 0.77962 0.81099 0.85754 1.90546 1.63970 1.80572 1.15796 1.21357 1.41647 1.03330 0.94423 0.90417 1.26954 0.94258 1.02263 0.95147 1.70190 1.35854 1.31493 1.07762 0.85062 0.78859 0.75696 0.78924 1.18536 1.19615 1.17403 0.91144 0.93855 0.95847 0.95269 0.91763 0.92419 0.90500 0.89018 0.87056 0.90299 0.91470 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.20 8.46 71.98 0.61 -4.59 16 2 C -0.09 -3.36 2.53 -10.80 -0.03 -3.39 16 3 C -0.13 -3.21 9.06 71.98 0.65 -2.56 16 4 C 0.12 4.51 4.18 45.09 0.19 4.70 16 5 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 6 C -0.12 -3.27 6.95 31.25 0.22 -3.05 16 7 C 0.10 3.52 8.46 86.48 0.73 4.25 16 8 N -0.68 -31.84 2.87 -818.95 -2.35 -34.20 16 9 C 0.56 34.09 6.64 86.36 0.57 34.66 16 10 O -0.62 -42.83 14.06 -4.31 -0.06 -42.90 16 11 C -0.57 -33.93 9.33 24.83 0.23 -33.69 16 12 H 0.08 4.23 7.68 -2.91 -0.02 4.21 16 13 C 0.03 1.64 5.50 85.30 0.47 2.11 16 14 N -0.82 -52.03 11.83 21.83 0.26 -51.77 16 15 Si 1.00 42.50 29.56 68.60 2.03 44.53 16 16 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 17 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 18 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 19 H 0.07 2.32 6.47 -2.39 -0.02 2.30 16 20 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 21 H 0.02 1.18 5.27 -2.39 -0.01 1.16 16 22 H 0.03 1.32 8.05 -2.39 -0.02 1.30 16 23 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.08 1.58 7.64 -2.38 -0.02 1.57 16 26 H 0.09 2.43 6.21 -2.39 -0.01 2.41 16 27 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 29 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.27 15.64 8.29 -92.71 -0.77 14.87 16 Total: -1.00 -78.60 247.36 4.63 -73.97 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 1.11 Total: 11.94 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 3.65 Total: -1.57 kcal Atomic # 7 Polarization: -83.88 SS G_CDS: -2.09 Total: -85.97 kcal Atomic # 8 Polarization: -42.83 SS G_CDS: -0.06 Total: -42.90 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -78.60 4.63 -73.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306422614.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.430 kcal (2) G-P(sol) polarization free energy of solvation -78.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds