Wall clock time and date at job start Sun Mar 29 2020 21:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50700 * 119.99965 * 2 1 4 4 H 1.08991 * 109.46534 * 5.01863 * 3 2 1 5 5 C 1.53034 * 109.45972 * 124.99919 * 3 2 1 6 6 C 1.53124 * 109.31038 * 179.16107 * 5 3 2 7 7 C 1.53129 * 109.15952 * 302.40635 * 6 5 3 8 8 C 1.53033 * 109.30970 * 57.58925 * 7 6 5 9 9 N 1.46846 * 109.52775 * 300.84654 * 8 7 6 10 10 C 1.46905 * 111.00197 * 185.84140 * 9 8 7 11 11 C 1.50703 * 109.46864 * 300.25706 * 10 9 8 12 12 H 1.07997 * 119.99806 * 4.86296 * 11 10 9 13 13 C 1.37874 * 119.99969 * 184.86004 * 11 10 9 14 14 N 1.31518 * 119.99931 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99903 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47332 * 90.00327 * 15 13 11 17 17 H 1.48504 * 109.47093 * 209.99878 * 15 13 11 18 18 H 1.48494 * 109.47419 * 329.99813 * 15 13 11 19 19 H 1.08007 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.08001 * 120.00235 * 180.02562 * 1 2 3 21 21 H 1.07997 * 119.99642 * 179.97438 * 2 1 3 22 22 H 1.08992 * 109.50283 * 299.11999 * 5 3 2 23 23 H 1.08999 * 109.50655 * 59.20422 * 5 3 2 24 24 H 1.09002 * 109.52337 * 62.26489 * 6 5 3 25 25 H 1.08996 * 109.52419 * 182.46252 * 6 5 3 26 26 H 1.09007 * 109.46641 * 297.65711 * 7 6 5 27 27 H 1.08991 * 109.54116 * 177.57347 * 7 6 5 28 28 H 1.09005 * 109.46468 * 180.82912 * 8 7 6 29 29 H 1.08996 * 109.45561 * 60.85588 * 8 7 6 30 30 H 1.09002 * 109.47099 * 60.26142 * 10 9 8 31 31 H 1.09003 * 109.46948 * 180.26277 * 10 9 8 32 32 H 0.96998 * 119.99888 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3586 2.1315 0.0899 5 6 3.0352 1.3328 1.1820 6 6 3.8138 2.6513 1.1666 7 6 4.5467 2.7865 -0.1711 8 6 3.5312 2.7166 -1.3138 9 7 2.8140 1.4365 -1.2554 10 6 1.9293 1.2752 -2.4170 11 6 0.9239 2.3976 -2.4424 12 1 0.9889 3.1971 -1.7193 13 6 -0.0787 2.4037 -3.3887 14 7 -0.1581 1.4298 -4.2690 15 14 -1.3244 3.7953 -3.4206 16 1 -0.8281 4.8840 -4.3001 17 1 -2.6191 3.2888 -3.9426 18 1 -1.5165 4.3194 -2.0445 19 1 -0.5400 0.9354 -0.0004 20 1 -0.5400 -0.9353 0.0004 21 1 1.8500 -0.9353 0.0004 22 1 2.4765 1.2510 2.1143 23 1 3.7314 0.4982 1.1004 24 1 3.1216 3.4845 1.2879 25 1 4.5377 2.6563 1.9814 26 1 5.2671 1.9750 -0.2743 27 1 5.0683 3.7429 -0.2059 28 1 4.0520 2.7978 -2.2680 29 1 2.8194 3.5363 -1.2176 30 1 2.5223 1.2978 -3.3313 31 1 1.4069 0.3211 -2.3462 32 1 -0.8637 1.4339 -4.9345 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306449747.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:49 Heat of formation + Delta-G solvation = -8.920317 kcal Electronic energy + Delta-G solvation = -12878.423745 eV Core-core repulsion = 10837.999014 eV Total energy + Delta-G solvation = -2040.424731 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.11389 -35.45002 -34.74966 -33.48825 -30.45696 -28.65603 -25.67151 -23.95106 -22.99575 -20.62866 -20.50523 -18.29890 -17.06390 -16.32575 -15.93649 -15.35894 -15.06444 -14.67426 -14.41966 -14.26657 -13.45524 -13.19591 -12.96164 -12.81333 -12.42346 -12.19993 -12.10697 -11.91207 -11.76850 -11.49148 -11.19075 -11.03403 -10.58165 -10.04263 -8.96506 -8.12157 -6.30893 1.33849 1.34591 1.44396 1.54109 2.36671 3.11962 3.44887 3.98300 4.07131 4.21378 4.31365 4.45005 4.52323 4.69569 4.87217 4.91745 5.02705 5.06435 5.12896 5.17565 5.30125 5.33001 5.38261 5.42259 5.57693 5.77951 5.81396 5.98413 6.14509 6.35812 6.64118 6.90269 7.39480 8.89516 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.036883 B = 0.012831 C = 0.011399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.980669 B = 2181.649788 C = 2455.743529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.139 4.139 3 C 0.117 3.883 4 H 0.016 0.984 5 C -0.103 4.103 6 C -0.116 4.116 7 C -0.109 4.109 8 C 0.061 3.939 9 N -0.535 5.535 10 C 0.200 3.800 11 C -0.545 4.545 12 H 0.049 0.951 13 C 0.016 3.984 14 N -0.924 5.924 15 Si 0.949 3.051 16 H -0.275 1.275 17 H -0.280 1.280 18 H -0.270 1.270 19 H 0.076 0.924 20 H 0.108 0.892 21 H 0.114 0.886 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.049 0.951 25 H 0.088 0.912 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.053 0.947 29 H 0.014 0.986 30 H -0.007 1.007 31 H 0.019 0.981 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.374 1.073 10.280 11.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.157 4.157 3 C 0.009 3.991 4 H 0.034 0.966 5 C -0.141 4.141 6 C -0.153 4.153 7 C -0.146 4.146 8 C -0.068 4.068 9 N -0.258 5.258 10 C 0.073 3.927 11 C -0.584 4.584 12 H 0.067 0.933 13 C -0.184 4.184 14 N -0.564 5.564 15 Si 0.774 3.226 16 H -0.200 1.200 17 H -0.206 1.206 18 H -0.195 1.195 19 H 0.095 0.905 20 H 0.126 0.874 21 H 0.132 0.868 22 H 0.093 0.907 23 H 0.091 0.909 24 H 0.068 0.932 25 H 0.107 0.893 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.071 0.929 29 H 0.032 0.968 30 H 0.011 0.989 31 H 0.037 0.963 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.642 0.639 10.120 11.604 hybrid contribution -1.640 1.235 -0.759 2.189 sum 4.001 1.875 9.362 10.352 Atomic orbital electron populations 1.23761 0.96253 1.01214 1.01029 1.22786 0.95595 0.98105 0.99245 1.20629 0.93816 0.93951 0.90698 0.96553 1.21594 0.97684 0.98704 0.96085 1.21568 0.99220 0.96856 0.97684 1.21592 0.97147 1.02326 0.93568 1.21940 0.95669 0.90305 0.98876 1.62437 1.28697 1.32295 1.02415 1.19415 0.89777 0.95711 0.87790 1.21858 1.13017 1.08786 1.14734 0.93280 1.25710 0.99459 0.98024 0.95187 1.70060 1.34227 1.33513 1.18565 0.85698 0.78755 0.79736 0.78382 1.20025 1.20581 1.19502 0.90540 0.87416 0.86774 0.90722 0.90898 0.93234 0.89323 0.91095 0.90312 0.92872 0.96772 0.98860 0.96321 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.10 14.20 67.77 0.96 -6.14 16 2 C -0.14 -5.33 7.25 25.64 0.19 -5.14 16 3 C 0.12 4.62 1.85 44.19 0.08 4.71 16 4 H 0.02 0.74 6.68 -2.39 -0.02 0.73 16 5 C -0.10 -3.07 5.35 30.65 0.16 -2.91 16 6 C -0.12 -3.10 6.01 30.68 0.18 -2.91 16 7 C -0.11 -3.18 6.09 30.65 0.19 -2.99 16 8 C 0.06 2.41 5.04 86.32 0.43 2.84 16 9 N -0.53 -23.59 4.69 -880.05 -4.12 -27.71 16 10 C 0.20 10.75 4.84 85.56 0.41 11.17 16 11 C -0.54 -30.66 7.73 25.60 0.20 -30.47 16 12 H 0.05 2.77 5.85 -2.91 -0.02 2.75 16 13 C 0.02 0.88 5.46 84.65 0.46 1.35 16 14 N -0.92 -55.56 13.29 21.45 0.28 -55.28 16 15 Si 0.95 44.64 29.54 68.60 2.03 46.67 16 16 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 17 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 18 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 19 H 0.08 3.20 7.84 -2.91 -0.02 3.17 16 20 H 0.11 3.60 8.06 -2.91 -0.02 3.58 16 21 H 0.11 4.01 8.06 -2.91 -0.02 3.99 16 22 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 23 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 24 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 27 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.05 2.18 8.12 -2.38 -0.02 2.16 16 29 H 0.01 0.62 6.57 -2.39 -0.02 0.60 16 30 H -0.01 -0.40 8.14 -2.39 -0.02 -0.41 16 31 H 0.02 1.08 6.66 -2.39 -0.02 1.07 16 32 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -62.17 255.80 2.52 -59.65 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: 1.06 Total: 7.16 kcal Atomic # 6 Polarization: -33.76 SS G_CDS: 3.27 Total: -30.49 kcal Atomic # 7 Polarization: -79.15 SS G_CDS: -3.84 Total: -82.99 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -62.17 2.52 -59.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306449747.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.727 kcal (2) G-P(sol) polarization free energy of solvation -62.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds