Wall clock time and date at job start Sun Mar 29 2020 21:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47409 * 2 1 4 4 N 1.46504 * 109.47009 * 240.00164 * 2 1 3 5 5 C 1.36943 * 119.99781 * 85.00152 * 4 2 1 6 6 H 1.08002 * 119.99788 * 359.97438 * 5 4 2 7 7 C 1.38811 * 119.99622 * 180.27904 * 5 4 2 8 8 N 1.31614 * 120.00467 * 359.72375 * 7 5 4 9 9 Si 1.86801 * 119.99700 * 179.72266 * 7 5 4 10 10 H 1.48504 * 109.47306 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47021 * 119.99661 * 9 7 5 12 12 H 1.48501 * 109.47039 * 240.00078 * 9 7 5 13 13 C 1.50700 * 109.47460 * 120.00542 * 2 1 3 14 14 N 1.33239 * 125.52664 * 74.68849 * 13 2 1 15 15 C 1.30832 * 109.82666 * 179.85746 * 14 13 2 16 16 N 1.34429 * 108.08094 * 0.40677 * 15 14 13 17 17 C 1.46498 * 126.82329 * 179.72364 * 16 15 14 18 18 N 1.30716 * 125.52566 * 255.00115 * 13 2 1 19 19 H 1.08999 * 109.47409 * 179.97438 * 1 2 3 20 20 H 1.09007 * 109.46569 * 299.99572 * 1 2 3 21 21 H 1.09001 * 109.47135 * 59.99282 * 1 2 3 22 22 H 0.97000 * 120.00410 * 265.00478 * 4 2 1 23 23 H 0.96995 * 120.00147 * 180.02562 * 8 7 5 24 24 H 1.08009 * 125.96045 * 180.11987 * 15 14 13 25 25 H 1.09001 * 109.46655 * 270.03142 * 17 16 15 26 26 H 1.08997 * 109.47293 * 30.03611 * 17 16 15 27 27 H 1.08998 * 109.46929 * 150.04167 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0074 -2.3758 6 1 1.8918 1.0405 -2.4243 7 6 2.6062 -0.6631 -3.5106 8 7 2.9192 -1.9402 -3.4517 9 14 2.7773 0.2670 -5.1216 10 1 2.3636 1.6795 -4.9240 11 1 4.1921 0.2233 -5.5705 12 1 1.9115 -0.3625 -6.1509 13 6 2.0324 -0.7105 1.2304 14 7 2.0205 -2.0290 1.4221 15 6 2.5314 -2.3117 2.5929 16 7 2.8780 -1.1566 3.1869 17 6 3.4822 -0.9974 4.5119 18 7 2.5452 -0.1328 2.2849 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5139 -0.8899 22 1 2.2489 -1.6318 -1.1528 23 1 3.2390 -2.3982 -4.2446 24 1 2.6493 -3.3004 3.0114 25 1 2.6959 -0.8930 5.2595 26 1 4.0887 -1.8732 4.7423 27 1 4.1113 -0.1074 4.5197 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306453323.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:36 Heat of formation + Delta-G solvation = 103.597216 kcal Electronic energy + Delta-G solvation = -12081.139897 eV Core-core repulsion = 9876.628037 eV Total energy + Delta-G solvation = -2204.511859 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.102 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.63507 -35.63702 -33.48172 -31.82233 -30.61228 -28.34230 -26.84108 -24.06769 -22.29049 -21.59294 -19.35731 -17.25346 -16.54217 -15.65270 -14.80678 -14.62723 -13.75326 -13.31546 -13.29183 -13.05135 -12.29003 -12.12695 -11.47820 -11.33597 -10.81145 -10.73429 -10.50566 -9.99279 -9.72284 -9.47482 -9.38860 -9.10751 -8.82954 -6.90601 -5.68088 -2.97727 1.98104 2.61551 3.42501 3.49652 3.54564 3.56910 4.52687 4.63559 4.69259 5.06517 5.14559 5.30390 5.47056 5.65912 5.98126 6.18025 6.37105 6.59208 6.69029 6.77831 6.90288 7.04005 7.22857 7.76922 8.48001 8.59703 9.61596 10.17710 10.56481 11.54220 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.061875 B = 0.008390 C = 0.008079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.419674 B = 3336.360315 C = 3465.115588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.261 3.739 3 H 0.067 0.933 4 N -0.714 5.714 5 C -0.240 4.240 6 H 0.073 0.927 7 C -0.012 4.012 8 N -0.928 5.928 9 Si 0.908 3.092 10 H -0.279 1.279 11 H -0.292 1.292 12 H -0.291 1.291 13 C 0.244 3.756 14 N -0.524 5.524 15 C 0.242 3.758 16 N -0.398 5.398 17 C 0.102 3.898 18 N -0.328 5.328 19 H 0.055 0.945 20 H 0.036 0.964 21 H 0.064 0.936 22 H 0.394 0.606 23 H 0.254 0.746 24 H 0.214 0.786 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.395 0.413 14.826 14.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.148 3.852 3 H 0.085 0.915 4 N -0.356 5.356 5 C -0.371 4.371 6 H 0.091 0.909 7 C -0.208 4.208 8 N -0.576 5.576 9 Si 0.739 3.261 10 H -0.205 1.205 11 H -0.220 1.220 12 H -0.219 1.219 13 C -0.039 4.039 14 N -0.250 5.250 15 C -0.055 4.055 16 N -0.190 5.190 17 C -0.041 4.041 18 N -0.156 5.156 19 H 0.074 0.926 20 H 0.055 0.945 21 H 0.083 0.917 22 H 0.229 0.771 23 H 0.064 0.936 24 H 0.230 0.770 25 H 0.092 0.908 26 H 0.106 0.894 27 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.366 1.075 14.617 14.661 hybrid contribution 0.401 -0.202 -0.493 0.667 sum 0.035 0.873 14.124 14.151 Atomic orbital electron populations 1.22366 0.97298 1.01760 1.00279 1.18530 0.92310 0.93870 0.80471 0.91477 1.42385 1.77962 1.11161 1.04140 1.19308 1.36939 0.94033 0.86859 0.90861 1.24757 1.02040 0.95970 0.98035 1.69711 1.50642 1.08623 1.28616 0.86105 0.77226 0.78808 0.83975 1.20463 1.21956 1.21857 1.25086 0.94910 0.88497 0.95427 1.70427 1.23083 1.15735 1.15780 1.26037 0.95854 0.93268 0.90364 1.50400 1.47911 1.05167 1.15482 1.21799 0.98446 1.04321 0.79515 1.78014 1.23685 1.11606 1.02259 0.92626 0.94489 0.91675 0.77118 0.93579 0.76994 0.90815 0.89408 0.89433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 9.47 37.16 0.35 -2.79 15 2 C 0.26 5.95 3.43 -69.08 -0.24 5.71 15 3 H 0.07 1.52 8.08 -51.93 -0.42 1.10 15 4 N -0.71 -19.43 5.11 -54.55 -0.28 -19.71 15 5 C -0.24 -6.93 9.93 -15.06 -0.15 -7.08 15 6 H 0.07 2.02 7.83 -52.49 -0.41 1.61 15 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 15 8 N -0.93 -29.08 13.06 55.49 0.72 -28.36 15 9 Si 0.91 22.87 29.55 -169.99 -5.02 17.84 15 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 11 H -0.29 -7.40 7.11 56.52 0.40 -7.00 15 12 H -0.29 -7.35 7.11 56.52 0.40 -6.95 15 13 C 0.24 5.22 6.93 -156.85 -1.09 4.13 15 14 N -0.52 -10.67 10.87 -11.97 -0.13 -10.80 15 15 C 0.24 3.65 12.66 -90.65 -1.15 2.50 15 16 N -0.40 -5.91 4.04 -69.44 -0.28 -6.20 15 17 C 0.10 0.87 11.53 59.85 0.69 1.56 15 18 N -0.33 -6.38 12.70 32.42 0.41 -5.97 15 19 H 0.05 1.15 8.14 -51.93 -0.42 0.73 15 20 H 0.04 0.65 8.14 -51.93 -0.42 0.22 15 21 H 0.06 1.31 8.14 -51.93 -0.42 0.89 15 22 H 0.39 11.60 7.53 -40.82 -0.31 11.29 15 23 H 0.25 7.64 8.31 -40.82 -0.34 7.30 15 24 H 0.21 2.00 8.06 -52.48 -0.42 1.58 15 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 15 26 H 0.09 0.48 8.14 -51.93 -0.42 0.05 15 27 H 0.09 0.74 8.14 -51.93 -0.42 0.32 15 LS Contribution 244.78 15.07 3.69 3.69 Total: -1.00 -35.25 244.78 -5.80 -41.05 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -3.23 Total: 4.85 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -1.68 Total: 3.60 kcal Atomic # 7 Polarization: -71.48 SS G_CDS: 0.45 Total: -71.04 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -35.25 -5.80 -41.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306453323.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.643 kcal (2) G-P(sol) polarization free energy of solvation -35.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds