Wall clock time and date at job start Sun Mar 29 2020 21:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30631 * 128.63749 * 2 1 4 4 O 1.20833 * 109.64451 * 180.02562 * 3 2 1 5 5 N 1.20903 * 115.92634 * 359.71120 * 4 3 2 6 6 C 1.31694 * 109.15841 * 0.46102 * 5 4 3 7 7 C 1.48101 * 128.72586 * 179.85425 * 6 5 4 8 8 O 1.21563 * 120.00076 * 179.67720 * 7 6 5 9 9 N 1.34771 * 120.00299 * 359.40540 * 7 6 5 10 10 C 1.36747 * 120.00565 * 180.27455 * 9 7 6 11 11 H 1.08002 * 120.00085 * 0.02562 * 10 9 7 12 12 C 1.39140 * 120.00332 * 179.97438 * 10 9 7 13 13 N 1.31304 * 119.99464 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 119.99951 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47176 * 90.00086 * 14 12 10 16 16 H 1.48501 * 109.46931 * 209.99958 * 14 12 10 17 17 H 1.48503 * 109.47412 * 329.99652 * 14 12 10 18 18 H 1.08998 * 109.47370 * 269.97508 * 1 2 3 19 19 H 1.08997 * 109.47088 * 29.98231 * 1 2 3 20 20 H 1.09006 * 109.46465 * 149.97912 * 1 2 3 21 21 H 0.97000 * 119.99371 * 0.26861 * 9 7 6 22 22 H 0.97005 * 119.99530 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3227 1.0204 0.0000 4 8 3.4652 0.6271 -0.0005 5 7 3.6112 -0.5731 0.0046 6 6 2.4285 -1.1523 -0.0005 7 6 2.1046 -2.5974 -0.0003 8 8 0.9444 -2.9603 0.0004 9 7 3.0961 -3.5103 -0.0064 10 6 2.7970 -4.8447 -0.0119 11 1 1.7663 -5.1671 -0.0117 12 6 3.8207 -5.7871 -0.0188 13 7 5.0738 -5.3950 -0.0205 14 14 3.4121 -7.6097 -0.0270 15 1 3.3008 -8.0858 -1.4292 16 1 4.4885 -8.3614 0.6670 17 1 2.1222 -7.8311 0.6747 18 1 -0.3634 -0.0004 1.0276 19 1 -0.3633 0.8901 -0.5135 20 1 -0.3632 -0.8899 -0.5142 21 1 4.0218 -3.2207 -0.0070 22 1 5.7875 -6.0520 -0.0257 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306455149.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:37 Heat of formation + Delta-G solvation = 67.137745 kcal Electronic energy + Delta-G solvation = -12007.435790 eV Core-core repulsion = 9567.791173 eV Total energy + Delta-G solvation = -2439.644617 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -46.23277 -38.27573 -34.81979 -34.14496 -33.91308 -31.52768 -29.04653 -26.15820 -24.08025 -21.87923 -20.01113 -18.46379 -18.39941 -17.26521 -16.19537 -14.93393 -14.18887 -13.75255 -13.70440 -13.18149 -13.16935 -12.79512 -11.84049 -11.48576 -11.29875 -11.28148 -10.59293 -10.56665 -10.46659 -9.90011 -9.66365 -8.92068 -8.30943 -6.75010 -4.08367 1.47423 1.82242 3.06553 3.12350 3.17816 3.75564 3.93709 3.97741 4.07182 4.21794 5.05357 5.07057 5.29495 5.53711 5.71577 5.87162 6.08005 6.34182 7.24100 7.71431 8.25816 8.82325 9.01498 9.20109 9.70327 10.40117 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.066120 B = 0.009351 C = 0.008229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.372564 B = 2993.634929 C = 3401.852928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.040 3.960 3 N -0.374 5.374 4 O 0.314 5.686 5 N -0.349 5.349 6 C -0.003 4.003 7 C 0.490 3.510 8 O -0.582 6.582 9 N -0.514 5.514 10 C -0.298 4.298 11 H 0.114 0.886 12 C 0.028 3.972 13 N -0.872 5.872 14 Si 0.941 3.059 15 H -0.273 1.273 16 H -0.279 1.279 17 H -0.264 1.264 18 H 0.086 0.914 19 H 0.077 0.923 20 H 0.101 0.899 21 H 0.401 0.599 22 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.274 5.540 -0.005 6.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.126 4.126 3 N -0.101 5.101 4 O 0.098 5.902 5 N -0.076 5.076 6 C -0.168 4.168 7 C 0.276 3.724 8 O -0.468 6.468 9 N -0.147 5.147 10 C -0.429 4.429 11 H 0.132 0.868 12 C -0.178 4.178 13 N -0.510 5.510 14 Si 0.766 3.234 15 H -0.198 1.198 16 H -0.205 1.205 17 H -0.189 1.189 18 H 0.104 0.896 19 H 0.095 0.905 20 H 0.120 0.880 21 H 0.236 0.764 22 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.872 5.945 0.005 6.602 hybrid contribution -0.078 -1.190 0.004 1.192 sum -2.950 4.755 0.009 5.596 Atomic orbital electron populations 1.20199 0.83664 1.04519 1.04046 1.26089 1.00043 0.85879 1.00586 1.74863 0.91720 1.24746 1.18814 1.84957 1.22890 1.17479 1.64834 1.75422 1.23332 0.92035 1.16845 1.26629 0.86896 0.99520 1.03775 1.16012 0.86345 0.80646 0.89443 1.90623 1.18697 1.78463 1.58970 1.41826 1.08366 1.06071 1.58466 1.19939 0.95672 0.79926 1.47315 0.86778 1.25552 0.94485 1.01802 0.95954 1.69600 0.99205 1.36590 1.45606 0.85681 0.78673 0.80160 0.78844 1.19845 1.20463 1.18858 0.89596 0.90457 0.87988 0.76409 0.90895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.95 10.22 36.01 0.37 -0.59 14 2 C 0.04 0.72 7.79 -79.31 -0.62 0.10 14 3 N -0.37 -6.59 12.22 33.78 0.41 -6.18 14 4 O 0.31 5.72 11.65 27.27 0.32 6.04 14 5 N -0.35 -7.07 12.14 33.51 0.41 -6.67 14 6 C 0.00 -0.06 7.56 -80.09 -0.61 -0.67 14 7 C 0.49 12.08 7.79 -12.21 -0.10 11.98 14 8 O -0.58 -15.27 15.53 5.31 0.08 -15.19 14 9 N -0.51 -13.27 5.27 -11.77 -0.06 -13.33 14 10 C -0.30 -7.97 9.68 -15.02 -0.15 -8.11 14 11 H 0.11 3.11 7.15 -52.49 -0.38 2.73 14 12 C 0.03 0.72 5.50 -17.44 -0.10 0.62 14 13 N -0.87 -22.77 13.05 55.51 0.72 -22.05 14 14 Si 0.94 19.63 29.55 -169.99 -5.02 14.61 14 15 H -0.27 -5.62 7.11 56.52 0.40 -5.21 14 16 H -0.28 -5.70 7.11 56.52 0.40 -5.30 14 17 H -0.26 -5.47 7.11 56.52 0.40 -5.07 14 18 H 0.09 1.11 8.14 -51.93 -0.42 0.68 14 19 H 0.08 0.90 8.14 -51.93 -0.42 0.47 14 20 H 0.10 1.58 7.31 -51.93 -0.38 1.20 14 21 H 0.40 10.27 7.75 -40.82 -0.32 9.95 14 22 H 0.28 6.82 8.31 -40.82 -0.34 6.48 14 LS Contribution 216.06 15.07 3.26 3.26 Total: -1.00 -28.11 216.06 -2.13 -30.23 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -1.05 Total: 5.94 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -1.19 Total: 3.34 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: 1.48 Total: -48.23 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.40 Total: -9.15 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -28.11 -2.13 -30.23 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306455149.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.372 kcal (2) G-P(sol) polarization free energy of solvation -28.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds