Wall clock time and date at job start Sun Mar 29 2020 21:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00237 * 2 1 4 4 H 1.48499 * 109.47169 * 240.00445 * 3 2 1 5 5 H 1.48497 * 109.47009 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47360 * 119.99906 * 3 2 1 7 7 C 1.37880 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99948 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99846 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.46987 * 179.97438 * 9 7 2 11 11 C 1.46900 * 111.00390 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.23026 * 35.51275 * 11 10 9 13 13 C 1.53788 * 108.03905 * 274.69325 * 11 10 9 14 14 C 1.53299 * 107.93923 * 184.43887 * 13 11 10 15 15 C 1.52871 * 108.58161 * 75.07067 * 14 13 11 16 16 C 1.52712 * 110.15480 * 305.47360 * 15 14 13 17 17 H 1.08996 * 115.39083 * 231.22059 * 16 15 14 18 18 C 1.53651 * 115.14548 * 89.81077 * 16 15 14 19 19 C 1.52066 * 120.51895 * 21.47708 * 16 15 14 20 20 H 1.09007 * 115.93068 * 209.64098 * 19 16 15 21 21 H 0.97003 * 119.99890 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.47063 * 60.00185 * 9 7 2 23 23 H 1.08998 * 109.47091 * 299.99984 * 9 7 2 24 24 H 1.00906 * 111.00017 * 56.04299 * 10 9 7 25 25 H 1.09002 * 109.41616 * 65.20408 * 13 11 10 26 26 H 1.09000 * 110.60474 * 304.35221 * 13 11 10 27 27 H 1.09007 * 109.61648 * 315.33864 * 14 13 11 28 28 H 1.08999 * 109.61409 * 194.79824 * 14 13 11 29 29 H 1.09005 * 109.35494 * 185.27053 * 15 14 13 30 30 H 1.08995 * 109.24635 * 65.61608 * 15 14 13 31 31 H 1.08998 * 117.53718 * 140.55350 * 18 16 15 32 32 H 1.09002 * 117.53700 * 355.30866 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6158 0.0005 11 6 1.5052 -4.9072 -0.0001 12 1 0.5979 -4.8232 -0.5982 13 6 1.1725 -5.2692 1.4571 14 6 0.5428 -6.6668 1.4644 15 6 1.6475 -7.7001 1.2434 16 6 2.4242 -7.3757 -0.0308 17 1 2.5353 -8.2014 -0.7335 18 6 3.6347 -6.4488 0.1605 19 6 2.4099 -5.9683 -0.6067 20 1 2.5238 -5.8947 -1.6883 21 1 -0.4850 0.8401 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6239 -2.5567 0.8903 24 1 2.8404 -3.5487 0.7819 25 1 0.4623 -4.5455 1.8571 26 1 2.0756 -5.2716 2.0675 27 1 -0.1932 -6.7408 0.6636 28 1 0.0610 -6.8460 2.4255 29 1 1.2025 -8.6910 1.1528 30 1 2.3280 -7.6861 2.0947 31 1 4.5344 -6.6699 -0.4137 32 1 3.8004 -6.0352 1.1553 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306474475.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:25:50 Heat of formation + Delta-G solvation = 5.633835 kcal Electronic energy + Delta-G solvation = -12372.001636 eV Core-core repulsion = 10332.208020 eV Total energy + Delta-G solvation = -2039.793616 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.40987 -34.81864 -32.67424 -32.21453 -28.85287 -25.93052 -23.80244 -22.17898 -21.72246 -20.26592 -18.27490 -16.48454 -15.86667 -14.70534 -14.43528 -13.83620 -13.67102 -13.16266 -13.07163 -12.30091 -12.22708 -11.75880 -11.21221 -11.14880 -10.92792 -10.76469 -10.65776 -10.42448 -10.12933 -9.97588 -9.50401 -9.45091 -9.08708 -8.44830 -7.15552 -6.00299 -4.02041 3.35316 3.38923 3.42276 4.02934 4.45884 4.88094 4.93513 5.09631 5.21669 5.35276 5.42224 5.48754 5.60267 5.77976 5.84111 5.90479 5.98157 6.06830 6.12450 6.30857 6.41456 6.41761 6.58318 6.61620 6.71836 7.31358 7.48910 7.82618 8.17557 8.47100 8.68051 9.07607 9.62686 11.10683 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.068537 B = 0.007712 C = 0.007272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.438371 B = 3630.020230 C = 3849.381906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.514 4.514 8 H 0.061 0.939 9 C 0.195 3.805 10 N -0.685 5.685 11 C 0.117 3.883 12 H 0.077 0.923 13 C -0.150 4.150 14 C -0.116 4.116 15 C -0.086 4.086 16 C -0.158 4.158 17 H 0.096 0.904 18 C -0.177 4.177 19 C -0.112 4.112 20 H 0.096 0.904 21 H 0.261 0.739 22 H 0.026 0.974 23 H -0.013 1.013 24 H 0.329 0.671 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.839 -12.970 2.157 13.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.079 0.921 9 C 0.068 3.932 10 N -0.314 5.314 11 C 0.007 3.993 12 H 0.095 0.905 13 C -0.189 4.189 14 C -0.155 4.155 15 C -0.123 4.123 16 C -0.177 4.177 17 H 0.115 0.885 18 C -0.214 4.214 19 C -0.131 4.131 20 H 0.114 0.886 21 H 0.071 0.929 22 H 0.044 0.956 23 H 0.004 0.996 24 H 0.145 0.855 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.769 -12.799 1.455 13.176 hybrid contribution 0.113 0.918 0.865 1.267 sum 2.882 -11.881 2.320 12.444 Atomic orbital electron populations 1.69956 1.06065 1.26829 1.50978 1.24988 0.94873 0.99322 0.95403 0.86549 0.79424 0.82719 0.78630 1.20176 1.21358 1.20301 1.21181 0.93491 0.90362 1.50254 0.92076 1.19564 0.90624 0.87348 0.95632 1.60596 1.20897 1.00889 1.49029 1.21019 0.95493 0.89620 0.93219 0.90468 1.22542 1.00915 0.96573 0.98882 1.21559 0.97668 0.95123 1.01113 1.21023 0.97086 0.98408 0.95794 1.22254 1.01748 0.93931 0.99777 0.88547 1.22979 0.92170 1.04229 1.02068 1.21802 0.99337 0.92984 0.98980 0.88578 0.92904 0.95593 0.99561 0.85454 0.91675 0.92009 0.91797 0.92554 0.92224 0.92122 0.89609 0.89094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -14.83 9.32 -34.44 -0.32 -15.15 16 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.19 5.18 5.23 -4.97 -0.03 5.16 16 10 N -0.69 -14.99 6.20 -108.06 -0.67 -15.66 16 11 C 0.12 2.13 2.61 -67.78 -0.18 1.95 16 12 H 0.08 1.50 7.79 -51.93 -0.40 1.10 16 13 C -0.15 -2.43 4.89 -26.17 -0.13 -2.56 16 14 C -0.12 -1.55 5.92 -26.64 -0.16 -1.71 16 15 C -0.09 -1.03 5.81 -26.95 -0.16 -1.18 16 16 C -0.16 -2.05 6.24 -90.90 -0.57 -2.61 16 17 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 18 C -0.18 -2.46 9.60 -26.75 -0.26 -2.71 16 19 C -0.11 -1.75 5.60 -91.93 -0.51 -2.27 16 20 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 21 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 22 H 0.03 0.75 8.05 -51.93 -0.42 0.33 16 23 H -0.01 -0.37 7.45 -51.93 -0.39 -0.76 16 24 H 0.33 6.97 8.34 -39.29 -0.33 6.64 16 25 H 0.06 1.17 7.50 -51.93 -0.39 0.78 16 26 H 0.06 0.97 6.91 -51.93 -0.36 0.61 16 27 H 0.06 0.86 8.02 -51.92 -0.42 0.45 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.71 8.03 -51.93 -0.42 0.29 16 31 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.09 1.28 7.15 -51.93 -0.37 0.91 16 LS Contribution 257.09 15.07 3.87 3.87 Total: -1.00 -29.53 257.09 -8.63 -38.17 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -5.15 Total: 2.68 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -2.40 Total: -19.58 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.07 Total: -42.10 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.53 -8.63 -38.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306474475.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.799 kcal (2) G-P(sol) polarization free energy of solvation -29.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds