Wall clock time and date at job start Sun Mar 29 2020 21:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00237 * 2 1 4 4 H 1.48499 * 109.47169 * 240.00445 * 3 2 1 5 5 H 1.48497 * 109.47009 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47360 * 119.99906 * 3 2 1 7 7 C 1.37880 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99948 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99846 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.46987 * 179.97438 * 9 7 2 11 11 C 1.46900 * 111.00390 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.23026 * 35.51275 * 11 10 9 13 13 C 1.53788 * 108.03905 * 274.69325 * 11 10 9 14 14 C 1.53299 * 107.93923 * 184.43887 * 13 11 10 15 15 C 1.52871 * 108.58161 * 75.07067 * 14 13 11 16 16 C 1.52712 * 110.15480 * 305.47360 * 15 14 13 17 17 H 1.08996 * 115.39083 * 231.22059 * 16 15 14 18 18 C 1.53651 * 115.14548 * 89.81077 * 16 15 14 19 19 C 1.52066 * 120.51895 * 21.47708 * 16 15 14 20 20 H 1.09007 * 115.93068 * 209.64098 * 19 16 15 21 21 H 0.97003 * 119.99890 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.47063 * 60.00185 * 9 7 2 23 23 H 1.08998 * 109.47091 * 299.99984 * 9 7 2 24 24 H 1.00906 * 111.00017 * 56.04299 * 10 9 7 25 25 H 1.09002 * 109.41616 * 65.20408 * 13 11 10 26 26 H 1.09000 * 110.60474 * 304.35221 * 13 11 10 27 27 H 1.09007 * 109.61648 * 315.33864 * 14 13 11 28 28 H 1.08999 * 109.61409 * 194.79824 * 14 13 11 29 29 H 1.09005 * 109.35494 * 185.27053 * 15 14 13 30 30 H 1.08995 * 109.24635 * 65.61608 * 15 14 13 31 31 H 1.08998 * 117.53718 * 140.55350 * 18 16 15 32 32 H 1.09002 * 117.53700 * 355.30866 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6158 0.0005 11 6 1.5052 -4.9072 -0.0001 12 1 0.5979 -4.8232 -0.5982 13 6 1.1725 -5.2692 1.4571 14 6 0.5428 -6.6668 1.4644 15 6 1.6475 -7.7001 1.2434 16 6 2.4242 -7.3757 -0.0308 17 1 2.5353 -8.2014 -0.7335 18 6 3.6347 -6.4488 0.1605 19 6 2.4099 -5.9683 -0.6067 20 1 2.5238 -5.8947 -1.6883 21 1 -0.4850 0.8401 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6239 -2.5567 0.8903 24 1 2.8404 -3.5487 0.7819 25 1 0.4623 -4.5455 1.8571 26 1 2.0756 -5.2716 2.0675 27 1 -0.1932 -6.7408 0.6636 28 1 0.0610 -6.8460 2.4255 29 1 1.2025 -8.6910 1.1528 30 1 2.3280 -7.6861 2.0947 31 1 4.5344 -6.6699 -0.4137 32 1 3.8004 -6.0352 1.1553 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306474475.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:25:49 Heat of formation + Delta-G solvation = -12.933222 kcal Electronic energy + Delta-G solvation = -12372.806764 eV Core-core repulsion = 10332.208020 eV Total energy + Delta-G solvation = -2040.598744 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.65740 -36.59162 -34.51006 -33.62996 -30.50310 -27.76976 -25.25542 -23.69428 -23.32977 -21.52609 -19.64957 -18.43128 -17.24976 -16.67230 -15.91917 -15.41303 -15.09833 -14.55652 -14.25299 -14.19626 -13.68950 -13.48496 -12.93902 -12.70283 -12.59966 -12.32018 -12.13703 -11.92042 -11.68637 -11.42032 -11.26604 -10.71013 -10.65306 -10.53225 -8.98733 -8.23048 -6.34863 1.39890 1.43955 1.51981 2.39125 2.87210 3.09576 3.58322 3.79217 3.85271 4.06640 4.21602 4.24927 4.32827 4.55136 4.63011 4.70608 4.76418 4.97376 5.04386 5.07295 5.11049 5.23187 5.30008 5.35333 5.38402 5.41760 5.49742 5.61801 6.02634 6.48332 6.74131 6.90552 7.36265 8.88200 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.068537 B = 0.007712 C = 0.007272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.438371 B = 3630.020230 C = 3849.381906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.975 3.025 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.539 4.539 8 H 0.063 0.937 9 C 0.212 3.788 10 N -0.685 5.685 11 C 0.116 3.884 12 H 0.053 0.947 13 C -0.144 4.144 14 C -0.112 4.112 15 C -0.084 4.084 16 C -0.135 4.135 17 H 0.119 0.881 18 C -0.173 4.173 19 C -0.138 4.138 20 H 0.088 0.912 21 H 0.265 0.735 22 H -0.006 1.006 23 H -0.038 1.038 24 H 0.333 0.667 25 H 0.037 0.963 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.170 -14.028 2.654 14.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.798 3.202 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.577 4.577 8 H 0.082 0.918 9 C 0.085 3.915 10 N -0.314 5.314 11 C 0.006 3.994 12 H 0.071 0.929 13 C -0.183 4.183 14 C -0.151 4.151 15 C -0.122 4.122 16 C -0.154 4.154 17 H 0.137 0.863 18 C -0.210 4.210 19 C -0.157 4.157 20 H 0.106 0.894 21 H 0.074 0.926 22 H 0.012 0.988 23 H -0.021 1.021 24 H 0.150 0.850 25 H 0.056 0.944 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.117 0.883 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.109 -13.888 1.955 14.614 hybrid contribution -0.339 1.203 0.699 1.432 sum 3.770 -12.685 2.654 13.497 Atomic orbital electron populations 1.70092 1.07844 1.28082 1.51446 1.25981 0.95814 1.03453 0.94510 0.85363 0.78104 0.77513 0.79177 1.19351 1.20650 1.19016 1.21552 0.93800 0.91574 1.50772 0.91843 1.19169 0.90609 0.88917 0.92854 1.60509 1.20255 1.01348 1.49298 1.21038 0.95079 0.88692 0.94576 0.92850 1.22427 1.00764 0.98050 0.97076 1.21540 0.98156 0.93386 1.01972 1.21079 0.96593 0.98965 0.95518 1.22399 1.00327 0.92611 1.00036 0.86325 1.23057 0.92382 1.03934 1.01585 1.21616 1.01009 0.94447 0.98629 0.89381 0.92591 0.98831 1.02065 0.84959 0.94447 0.91266 0.92219 0.90891 0.89607 0.91121 0.88278 0.89332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.75 13.29 21.45 0.28 -57.47 16 2 C 0.00 0.03 5.46 84.66 0.46 0.49 16 3 Si 0.97 45.13 29.54 68.60 2.03 47.16 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.54 -31.76 9.32 25.60 0.24 -31.52 16 8 H 0.06 3.63 7.81 -2.91 -0.02 3.60 16 9 C 0.21 11.85 5.23 85.56 0.45 12.30 16 10 N -0.68 -30.95 6.20 -495.79 -3.07 -34.02 16 11 C 0.12 4.33 2.61 44.87 0.12 4.45 16 12 H 0.05 2.21 7.79 -2.39 -0.02 2.19 16 13 C -0.14 -4.69 4.89 30.96 0.15 -4.54 16 14 C -0.11 -2.81 5.92 30.65 0.18 -2.63 16 15 C -0.08 -1.73 5.81 30.46 0.18 -1.55 16 16 C -0.14 -3.09 6.24 -10.98 -0.07 -3.16 16 17 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 18 C -0.17 -4.38 9.60 30.58 0.29 -4.09 16 19 C -0.14 -4.21 5.60 -11.64 -0.07 -4.27 16 20 H 0.09 2.80 8.14 -2.38 -0.02 2.78 16 21 H 0.27 15.36 8.31 -92.71 -0.77 14.58 16 22 H -0.01 -0.39 8.05 -2.39 -0.02 -0.41 16 23 H -0.04 -2.28 7.45 -2.39 -0.02 -2.30 16 24 H 0.33 14.40 8.34 -89.69 -0.75 13.65 16 25 H 0.04 1.40 7.50 -2.39 -0.02 1.38 16 26 H 0.07 2.13 6.91 -2.39 -0.02 2.12 16 27 H 0.06 1.54 8.02 -2.38 -0.02 1.52 16 28 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.07 1.36 8.03 -2.39 -0.02 1.34 16 31 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.09 2.30 7.15 -2.39 -0.02 2.29 16 Total: -1.00 -64.46 257.09 1.51 -62.95 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.34 Total: 15.90 kcal Atomic # 6 Polarization: -36.45 SS G_CDS: 1.94 Total: -34.52 kcal Atomic # 7 Polarization: -88.70 SS G_CDS: -2.79 Total: -91.49 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -64.46 1.51 -62.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306474475.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.013 kcal (2) G-P(sol) polarization free energy of solvation -64.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds