Wall clock time and date at job start Sun Mar 29 2020 21:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31344 * 1 3 3 Si 1.86809 * 119.99734 * 2 1 4 4 H 1.48500 * 109.46984 * 269.99536 * 3 2 1 5 5 H 1.48504 * 109.46843 * 29.99371 * 3 2 1 6 6 H 1.48496 * 109.47258 * 149.99380 * 3 2 1 7 7 C 1.39067 * 120.00550 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00445 * 180.02562 * 7 2 1 9 9 N 1.36812 * 119.99923 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99813 * 180.27643 * 9 7 2 11 11 O 1.21643 * 120.00232 * 359.71961 * 10 9 7 12 12 C 1.47330 * 119.99822 * 179.72263 * 10 9 7 13 13 C 1.32559 * 118.49259 * 179.73102 * 12 10 9 14 14 C 1.50462 * 122.27099 * 180.16211 * 13 12 10 15 15 C 1.53231 * 109.51150 * 342.89417 * 14 13 12 16 16 C 1.53466 * 108.24777 * 46.98792 * 15 14 13 17 17 O 1.35500 * 118.49267 * 359.97438 * 12 10 9 18 18 H 0.96999 * 120.00341 * 0.02562 * 1 2 3 19 19 H 0.97001 * 119.99641 * 359.97438 * 9 7 2 20 20 H 1.07998 * 118.86134 * 0.37742 * 13 12 10 21 21 H 1.09003 * 109.60244 * 222.78579 * 14 13 12 22 22 H 1.08996 * 109.28990 * 102.81410 * 14 13 12 23 23 H 1.09004 * 109.70546 * 287.30190 * 15 14 13 24 24 H 1.08993 * 109.74076 * 166.69796 * 15 14 13 25 25 H 1.08997 * 109.69749 * 177.29347 * 16 15 14 26 26 H 1.09003 * 109.72480 * 56.72817 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2474 1.6179 0.0000 4 1 2.4950 2.0465 -1.4001 5 1 1.4447 2.6528 0.6999 6 1 3.5449 1.4404 0.7001 7 6 2.0089 -1.2043 0.0005 8 1 3.0889 -1.2043 0.0010 9 7 1.3249 -2.3892 0.0005 10 6 1.9989 -3.5563 0.0067 11 8 3.2154 -3.5562 0.0071 12 6 1.2624 -4.8322 0.0129 13 6 1.9552 -5.9624 0.0134 14 6 1.2905 -7.3122 0.0159 15 6 -0.1735 -7.1609 0.4424 16 6 -0.7857 -5.9952 -0.3459 17 8 -0.0922 -4.7967 0.0127 18 1 -0.4850 0.8400 -0.0004 19 1 0.3549 -2.3892 0.0005 20 1 3.0340 -5.9124 0.0155 21 1 1.8059 -7.9723 0.7135 22 1 1.3348 -7.7372 -0.9868 23 1 -0.2252 -6.9497 1.5105 24 1 -0.7177 -8.0793 0.2226 25 1 -1.8420 -5.8971 -0.0956 26 1 -0.6770 -6.1769 -1.4152 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306478486.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:11 Heat of formation + Delta-G solvation = -71.048995 kcal Electronic energy + Delta-G solvation = -12309.742851 eV Core-core repulsion = 9967.646350 eV Total energy + Delta-G solvation = -2342.096500 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.75488 -37.64959 -34.22335 -33.49867 -31.29192 -30.85328 -25.85892 -24.93658 -23.24044 -20.24209 -18.41546 -18.00180 -16.77114 -15.84721 -15.01970 -14.71866 -14.01598 -13.80432 -13.63322 -13.31901 -12.72321 -12.56984 -12.15490 -11.62898 -11.13129 -10.82324 -10.52265 -10.42738 -10.35390 -10.22706 -9.59218 -8.57770 -8.06510 -7.86299 -6.51419 -3.86271 2.23339 3.19227 3.23467 3.30055 3.74484 4.13057 4.31484 4.85475 4.92181 5.06192 5.24055 5.31951 5.49330 5.67886 5.76538 5.92848 6.02497 6.20346 6.33017 6.69859 6.93789 7.46144 7.82591 8.08044 8.57354 9.08252 9.48578 10.01053 10.64852 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.070285 B = 0.008930 C = 0.008018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.279657 B = 3134.579753 C = 3491.474389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.026 3.974 3 Si 0.935 3.065 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.301 4.301 8 H 0.108 0.892 9 N -0.530 5.530 10 C 0.469 3.531 11 O -0.591 6.591 12 C 0.069 3.931 13 C -0.245 4.245 14 C -0.077 4.077 15 C -0.161 4.161 16 C 0.060 3.940 17 O -0.316 6.316 18 H 0.276 0.724 19 H 0.401 0.599 20 H 0.133 0.867 21 H 0.074 0.926 22 H 0.068 0.932 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.101 0.899 26 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.403 -9.714 -0.316 10.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.178 4.178 3 Si 0.761 3.239 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.431 4.431 8 H 0.126 0.874 9 N -0.162 5.162 10 C 0.256 3.744 11 O -0.479 6.479 12 C 0.021 3.979 13 C -0.267 4.267 14 C -0.114 4.114 15 C -0.199 4.199 16 C -0.015 4.015 17 O -0.230 6.230 18 H 0.086 0.914 19 H 0.236 0.764 20 H 0.150 0.850 21 H 0.093 0.907 22 H 0.087 0.913 23 H 0.093 0.907 24 H 0.094 0.906 25 H 0.119 0.881 26 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.898 -9.326 -0.268 9.769 hybrid contribution -0.201 0.503 -0.070 0.546 sum -3.099 -8.823 -0.338 9.357 Atomic orbital electron populations 1.69618 1.06171 1.28680 1.47947 1.25419 0.95661 1.00124 0.96607 0.85779 0.79312 0.80194 0.78577 1.20146 1.20705 1.19132 1.19852 0.93738 0.82234 1.47315 0.87437 1.41900 1.10007 1.04532 1.59800 1.17337 0.87002 0.82526 0.87500 1.90634 1.12423 1.85984 1.58875 1.20887 0.81700 0.95704 0.99626 1.22732 1.01337 0.92110 1.10520 1.20335 0.94348 0.95338 1.01332 1.22248 0.97124 0.99096 1.01414 1.22917 0.96165 0.83881 0.98551 1.86000 1.16657 1.36199 1.84181 0.91442 0.76374 0.84952 0.90733 0.91334 0.90681 0.90566 0.88132 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.38 13.05 55.50 0.72 -23.65 15 2 C 0.03 0.70 5.50 -17.45 -0.10 0.60 15 3 Si 0.94 20.93 29.55 -169.99 -5.02 15.91 15 4 H -0.28 -6.07 7.11 56.52 0.40 -5.67 15 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 6 H -0.27 -5.95 7.11 56.52 0.40 -5.54 15 7 C -0.30 -8.65 9.68 -15.02 -0.15 -8.80 15 8 H 0.11 3.18 7.15 -52.49 -0.38 2.80 15 9 N -0.53 -14.55 5.27 -11.99 -0.06 -14.62 15 10 C 0.47 12.40 7.71 -12.56 -0.10 12.31 15 11 O -0.59 -17.17 15.61 5.24 0.08 -17.09 15 12 C 0.07 1.49 6.57 -37.79 -0.25 1.24 15 13 C -0.24 -4.61 9.55 -36.33 -0.35 -4.96 15 14 C -0.08 -1.05 6.22 -27.88 -0.17 -1.23 15 15 C -0.16 -1.99 6.23 -26.37 -0.16 -2.16 15 16 C 0.06 0.85 7.07 37.40 0.26 1.11 15 17 O -0.32 -6.21 9.57 -18.19 -0.17 -6.38 15 18 H 0.28 7.07 8.31 -40.82 -0.34 6.73 15 19 H 0.40 10.79 7.21 -40.82 -0.29 10.50 15 20 H 0.13 2.66 7.28 -52.49 -0.38 2.28 15 21 H 0.07 0.90 8.14 -51.93 -0.42 0.48 15 22 H 0.07 0.85 8.14 -51.93 -0.42 0.42 15 23 H 0.07 0.97 8.14 -51.93 -0.42 0.55 15 24 H 0.08 0.71 8.14 -51.93 -0.42 0.29 15 25 H 0.10 1.16 8.14 -51.93 -0.42 0.73 15 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 15 LS Contribution 231.70 15.07 3.49 3.49 Total: -1.00 -31.31 231.70 -4.69 -36.01 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -2.72 Total: 8.20 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -1.01 Total: -1.88 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.66 Total: -38.27 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.09 Total: -23.46 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -31.31 -4.69 -36.01 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306478486.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.041 kcal (2) G-P(sol) polarization free energy of solvation -31.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds