Wall clock time and date at job start Sun Mar 29 2020 22:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86805 * 119.99793 * 2 1 4 4 H 1.48507 * 109.47004 * 240.00254 * 3 2 1 5 5 H 1.48497 * 109.46995 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47163 * 120.00342 * 3 2 1 7 7 C 1.38811 * 120.00389 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00106 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99696 * 359.97438 * 7 2 1 10 10 C 1.47282 * 125.79368 * 0.02562 * 9 7 2 11 11 C 1.54321 * 107.30594 * 178.92255 * 10 9 7 12 12 C 1.55152 * 102.94305 * 337.81431 * 11 10 9 13 13 O 1.42901 * 111.03552 * 277.41284 * 12 11 10 14 14 C 1.52999 * 111.00774 * 153.57724 * 12 11 10 15 15 C 1.53000 * 117.49789 * 141.76998 * 14 12 11 16 16 C 1.53007 * 117.49776 * 73.11211 * 14 12 11 17 17 C 1.47423 * 125.64699 * 180.02562 * 9 7 2 18 18 H 0.96996 * 120.00387 * 0.02562 * 1 2 3 19 19 H 1.09003 * 109.86346 * 59.49486 * 10 9 7 20 20 H 1.09008 * 110.00053 * 298.42190 * 10 9 7 21 21 H 1.09010 * 110.71992 * 219.44989 * 11 10 9 22 22 H 1.09000 * 110.72262 * 96.18057 * 11 10 9 23 23 H 0.96704 * 113.99956 * 52.91865 * 13 12 11 24 24 H 1.08996 * 115.55015 * 287.44430 * 14 12 11 25 25 H 1.08997 * 117.49915 * 0.02562 * 15 14 12 26 26 H 1.09000 * 117.49314 * 145.02325 * 15 14 12 27 27 H 1.08995 * 117.49667 * 214.98013 * 16 14 12 28 28 H 1.08995 * 117.49519 * 359.97438 * 16 14 12 29 29 H 1.09002 * 110.36947 * 85.26346 * 17 9 7 30 30 H 1.09006 * 110.36868 * 323.05308 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2850 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1397 -2.5368 -0.0005 11 6 -0.4477 -4.0487 -0.0282 12 6 0.8538 -4.6578 -0.6132 13 8 0.8608 -4.5792 -2.0400 14 6 1.0417 -6.1024 -0.1456 15 6 1.6080 -7.1035 -1.1546 16 6 0.1306 -7.1676 -0.7591 17 6 1.9335 -3.7311 -0.0005 18 1 -0.4850 0.8400 -0.0004 19 1 -0.5607 -2.0564 -0.8838 20 1 -0.5599 -2.0893 0.9003 21 1 -1.2974 -4.2573 -0.6785 22 1 -0.6303 -4.4236 0.9788 23 1 0.6967 -3.6911 -2.3858 24 1 1.3267 -6.2251 0.8992 25 1 1.8471 -6.7328 -2.1514 26 1 2.2653 -7.8850 -0.7734 27 1 -0.1834 -7.9912 -0.1179 28 1 -0.6028 -6.8391 -1.4954 29 1 2.1668 -4.0420 1.0178 30 1 2.8340 -3.7400 -0.6148 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306480013.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:30 Heat of formation + Delta-G solvation = -0.746012 kcal Electronic energy + Delta-G solvation = -12990.314786 eV Core-core repulsion = 10787.099946 eV Total energy + Delta-G solvation = -2203.214840 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.94446 -35.86436 -34.24534 -31.89086 -29.14025 -27.49173 -24.61961 -22.11166 -21.65612 -20.05749 -19.43529 -17.06064 -15.80022 -15.39591 -14.74162 -14.50277 -13.73618 -13.18240 -13.02893 -12.15498 -11.80699 -11.53365 -11.31438 -11.16003 -10.93511 -10.82560 -10.38300 -10.24035 -10.12796 -10.11925 -9.75617 -9.48361 -8.98577 -8.58798 -6.84762 -5.72661 -3.06773 3.40263 3.44439 3.45732 4.06662 4.48262 4.74498 4.99228 5.19793 5.25900 5.48589 5.54690 5.66930 5.86302 5.89185 5.90433 6.06380 6.31858 6.40309 6.46619 6.55554 6.57607 6.71219 6.86007 7.53643 7.56948 7.79286 8.22783 8.27198 9.19851 9.80149 10.46091 11.38953 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.076871 B = 0.009394 C = 0.008957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 364.161380 B = 2979.966402 C = 3125.197936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.229 4.229 8 H 0.077 0.923 9 N -0.607 5.607 10 C 0.172 3.828 11 C -0.167 4.167 12 C 0.148 3.852 13 O -0.559 6.559 14 C -0.132 4.132 15 C -0.170 4.170 16 C -0.174 4.174 17 C 0.114 3.886 18 H 0.253 0.747 19 H 0.046 0.954 20 H 0.044 0.956 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.385 0.615 24 H 0.111 0.889 25 H 0.102 0.898 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.024 0.976 30 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.205 -10.213 -0.936 10.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.358 4.358 8 H 0.095 0.905 9 N -0.334 5.334 10 C 0.048 3.952 11 C -0.206 4.206 12 C 0.107 3.893 13 O -0.366 6.366 14 C -0.151 4.151 15 C -0.207 4.207 16 C -0.211 4.211 17 C -0.013 4.013 18 H 0.063 0.937 19 H 0.065 0.935 20 H 0.062 0.938 21 H 0.084 0.916 22 H 0.083 0.917 23 H 0.233 0.767 24 H 0.129 0.871 25 H 0.120 0.880 26 H 0.103 0.897 27 H 0.105 0.895 28 H 0.113 0.887 29 H 0.042 0.958 30 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.267 -10.594 -0.876 10.634 hybrid contribution 0.298 1.561 0.120 1.594 sum 0.565 -9.033 -0.756 9.082 Atomic orbital electron populations 1.69946 1.04881 1.25199 1.57007 1.24810 0.95735 0.97693 1.02206 0.86183 0.78441 0.83117 0.77919 1.21135 1.21582 1.21182 1.19023 0.90431 0.82343 1.43961 0.90466 1.44565 1.01580 0.99900 1.87355 1.21237 0.84403 0.88324 1.01281 1.23499 0.97059 0.99531 1.00519 1.21613 0.95342 0.91649 0.80731 1.86236 1.94851 1.35747 1.19779 1.22093 1.05371 0.89640 0.97970 1.22841 0.95857 1.01062 1.00919 1.22849 0.93904 1.00641 1.03750 1.22145 0.95167 0.86541 0.97442 0.93682 0.93539 0.93823 0.91610 0.91651 0.76657 0.87101 0.87969 0.89655 0.89503 0.88742 0.95799 0.93614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.10 10.33 55.49 0.57 -26.53 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.23 -6.44 10.28 -15.06 -0.15 -6.59 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.61 -15.58 3.40 -169.86 -0.58 -16.16 16 10 C 0.17 4.18 5.10 -2.92 -0.01 4.17 16 11 C -0.17 -3.22 6.10 -24.90 -0.15 -3.38 16 12 C 0.15 2.74 1.14 -88.47 -0.10 2.64 16 13 O -0.56 -10.41 11.73 -35.23 -0.41 -10.83 16 14 C -0.13 -2.05 5.09 -90.62 -0.46 -2.51 16 15 C -0.17 -2.38 9.92 -26.69 -0.26 -2.65 16 16 C -0.17 -2.38 10.07 -26.69 -0.27 -2.65 16 17 C 0.11 2.44 6.42 -2.53 -0.02 2.42 16 18 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 19 H 0.05 1.23 7.39 -51.93 -0.38 0.84 16 20 H 0.04 1.18 7.52 -51.92 -0.39 0.79 16 21 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 22 H 0.06 1.19 8.04 -51.93 -0.42 0.77 16 23 H 0.38 7.18 8.76 45.56 0.40 7.58 16 24 H 0.11 1.61 8.07 -51.93 -0.42 1.19 16 25 H 0.10 1.56 7.29 -51.93 -0.38 1.18 16 26 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.02 0.51 7.98 -51.93 -0.41 0.10 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 247.84 15.07 3.73 3.73 Total: -1.00 -29.65 247.84 -6.90 -36.55 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -3.66 Total: 4.95 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -1.53 Total: -8.88 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 0.00 Total: -42.69 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: -0.41 Total: -10.83 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.65 -6.90 -36.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306480013.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.808 kcal (2) G-P(sol) polarization free energy of solvation -29.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds