Wall clock time and date at job start Sun Mar 29 2020 21:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.33640 * 125.81782 * 2 1 4 4 C 1.34217 * 110.92864 * 180.02562 * 3 2 1 5 5 C 1.34160 * 109.15466 * 359.70624 * 4 3 2 6 6 C 1.36554 * 125.81190 * 180.02562 * 2 1 3 7 7 C 1.47193 * 127.20360 * 359.96355 * 6 2 1 8 8 O 1.21565 * 119.99718 * 0.02562 * 7 6 2 9 9 O 1.34796 * 119.99825 * 179.97438 * 7 6 2 10 10 C 1.34884 * 116.99752 * 180.02562 * 9 7 6 11 11 H 1.08004 * 119.99705 * 359.73004 * 10 9 7 12 12 C 1.38767 * 119.99862 * 179.97438 * 10 9 7 13 13 N 1.31442 * 120.00320 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99690 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47028 * 60.00878 * 14 12 10 16 16 H 1.48503 * 109.46851 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47776 * 300.00481 * 14 12 10 18 18 H 1.09001 * 109.47202 * 269.96612 * 1 2 3 19 19 H 1.09002 * 109.47020 * 29.95839 * 1 2 3 20 20 H 1.08996 * 109.47594 * 149.96270 * 1 2 3 21 21 H 1.08007 * 125.42721 * 180.02562 * 4 3 2 22 22 H 1.08000 * 127.02893 * 180.27074 * 5 4 3 23 23 H 0.96996 * 119.99975 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2890 1.0837 0.0000 4 6 3.5861 0.7388 -0.0006 5 6 3.6859 -0.5991 0.0056 6 6 2.3060 -1.1074 -0.0005 7 6 1.8760 -2.5151 -0.0004 8 8 0.6916 -2.7888 -0.0003 9 8 2.7956 -3.5007 -0.0014 10 6 2.3346 -4.7683 -0.0018 11 1 1.2710 -4.9560 0.0032 12 6 3.2269 -5.8310 -0.0034 13 7 4.5213 -5.6025 -0.0041 14 14 2.5884 -7.5865 -0.0032 15 1 1.7598 -7.8120 -1.2148 16 1 3.7350 -8.5302 -0.0045 17 1 1.7629 -7.8130 1.2102 18 1 -0.3634 -0.0006 1.0277 19 1 -0.3633 0.8904 -0.5132 20 1 -0.3634 -0.8896 -0.5144 21 1 4.4174 1.4285 -0.0003 22 1 4.5941 -1.1835 0.0108 23 1 5.1449 -6.3454 -0.0049 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306492795.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:32 Heat of formation + Delta-G solvation = -92.365729 kcal Electronic energy + Delta-G solvation = -11887.947000 eV Core-core repulsion = 9474.518954 eV Total energy + Delta-G solvation = -2413.428047 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 196.057 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.51785 -40.79866 -37.30986 -34.37989 -33.94760 -32.80444 -28.47809 -27.27366 -24.59896 -22.46430 -20.60857 -19.88727 -18.99401 -17.46509 -17.38222 -16.32125 -16.27872 -16.25185 -15.18557 -14.24496 -14.16160 -13.84665 -13.78216 -13.59617 -13.20496 -12.70749 -12.41612 -12.16893 -12.04215 -11.14431 -10.86030 -10.71529 -9.57688 -8.57270 -6.35631 0.25096 1.09500 1.32582 1.43200 1.49551 1.81810 2.12991 2.20121 2.80418 2.99078 3.65242 3.92800 4.23232 4.47797 4.62663 4.75897 4.82096 4.97529 5.11822 5.24334 5.37843 5.79250 6.03205 6.58166 6.86838 7.73662 8.63885 Molecular weight = 196.06amu Principal moments of inertia in cm(-1) A = 0.064368 B = 0.009564 C = 0.008365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.894388 B = 2926.873211 C = 3346.622672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.073 3.927 3 O -0.167 6.167 4 C -0.016 4.016 5 C -0.204 4.204 6 C -0.251 4.251 7 C 0.464 3.536 8 O -0.575 6.575 9 O -0.237 6.237 10 C -0.423 4.423 11 H 0.085 0.915 12 C -0.006 4.006 13 N -0.902 5.902 14 Si 1.022 2.978 15 H -0.260 1.260 16 H -0.258 1.258 17 H -0.260 1.260 18 H 0.099 0.901 19 H 0.113 0.887 20 H 0.083 0.917 21 H 0.264 0.736 22 H 0.151 0.849 23 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.213 10.377 0.017 10.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.021 3.979 3 O -0.063 6.063 4 C -0.081 4.081 5 C -0.223 4.223 6 C -0.254 4.254 7 C 0.315 3.685 8 O -0.475 6.475 9 O -0.145 6.145 10 C -0.499 4.499 11 H 0.103 0.897 12 C -0.206 4.206 13 N -0.539 5.539 14 Si 0.840 3.160 15 H -0.184 1.184 16 H -0.182 1.182 17 H -0.184 1.184 18 H 0.118 0.882 19 H 0.132 0.868 20 H 0.102 0.898 21 H 0.279 0.721 22 H 0.169 0.831 23 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.374 10.482 0.017 10.747 hybrid contribution 0.175 -1.186 0.015 1.199 sum -2.199 9.295 0.032 9.552 Atomic orbital electron populations 1.20635 0.81937 1.05393 1.05217 1.23060 0.95048 0.82378 0.97438 1.83766 1.17686 1.33553 1.71342 1.24662 0.83728 0.95506 1.04179 1.23092 0.96116 0.95840 1.07284 1.20581 0.96087 0.90402 1.18330 1.20572 0.84176 0.86697 0.77076 1.90545 1.18937 1.85128 1.52859 1.83956 1.38040 1.15835 1.76709 1.21505 0.94344 0.79080 1.54929 0.89718 1.26643 0.94971 1.04445 0.94519 1.70080 1.02543 1.34819 1.46467 0.84629 0.78280 0.73158 0.79899 1.18432 1.18199 1.18450 0.88225 0.86846 0.89809 0.72060 0.83090 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.15 9.89 71.23 0.70 -1.45 14 2 C 0.07 2.57 7.38 25.29 0.19 2.76 14 3 O -0.17 -4.84 10.52 4.56 0.05 -4.79 14 4 C -0.02 -0.42 12.03 66.89 0.80 0.38 14 5 C -0.20 -7.59 11.05 23.66 0.26 -7.33 14 6 C -0.25 -11.18 6.32 -19.00 -0.12 -11.30 14 7 C 0.46 25.96 7.89 70.17 0.55 26.51 14 8 O -0.57 -32.92 14.10 19.62 0.28 -32.65 14 9 O -0.24 -15.04 9.65 10.38 0.10 -14.94 14 10 C -0.42 -26.79 9.65 67.95 0.66 -26.13 14 11 H 0.09 5.36 6.86 -2.91 -0.02 5.34 14 12 C -0.01 -0.33 5.49 84.88 0.47 0.14 14 13 N -0.90 -54.75 13.67 21.63 0.30 -54.46 14 14 Si 1.02 44.28 29.55 68.60 2.03 46.31 14 15 H -0.26 -10.79 7.11 99.48 0.71 -10.08 14 16 H -0.26 -10.24 7.11 99.48 0.71 -9.53 14 17 H -0.26 -10.80 7.11 99.48 0.71 -10.09 14 18 H 0.10 2.54 8.14 -2.39 -0.02 2.52 14 19 H 0.11 2.26 8.14 -2.39 -0.02 2.24 14 20 H 0.08 2.86 6.49 -2.39 -0.02 2.84 14 21 H 0.26 3.58 8.06 -2.91 -0.02 3.56 14 22 H 0.15 5.79 8.06 -2.91 -0.02 5.77 14 23 H 0.28 15.33 8.31 -92.71 -0.77 14.56 14 Total: -1.00 -77.31 222.57 7.49 -69.82 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: 1.23 Total: 7.13 kcal Atomic # 6 Polarization: -19.94 SS G_CDS: 3.51 Total: -16.42 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: 0.30 Total: -54.46 kcal Atomic # 8 Polarization: -52.80 SS G_CDS: 0.42 Total: -52.38 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -77.31 7.49 -69.82 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306492795.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.543 kcal (2) G-P(sol) polarization free energy of solvation -77.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds