Wall clock time and date at job start Sun Mar 29 2020 21:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29946 * 126.28685 * 2 1 4 4 O 1.21295 * 110.25317 * 180.02562 * 3 2 1 5 5 C 1.33640 * 109.81082 * 359.97438 * 4 3 2 6 6 C 1.50706 * 126.55413 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.47161 * 195.02505 * 6 5 4 8 8 C 1.52997 * 109.47103 * 75.02471 * 6 5 4 9 9 N 1.46500 * 109.46949 * 315.02489 * 6 5 4 10 10 C 1.36935 * 120.00170 * 205.00239 * 9 6 5 11 11 H 1.07997 * 119.99667 * 359.97438 * 10 9 6 12 12 C 1.38815 * 120.00097 * 180.02562 * 10 9 6 13 13 N 1.31618 * 119.99999 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00056 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47086 * 59.99298 * 14 12 10 16 16 H 1.48497 * 109.47034 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46755 * 299.99537 * 14 12 10 18 18 N 1.31129 * 106.89892 * 0.22620 * 5 4 3 19 19 H 1.08996 * 109.47448 * 89.97340 * 1 2 3 20 20 H 1.09007 * 109.46621 * 209.97814 * 1 2 3 21 21 H 1.09007 * 109.47167 * 329.97105 * 1 2 3 22 22 H 1.09000 * 109.47140 * 300.00046 * 8 6 5 23 23 H 1.08992 * 109.47280 * 59.99899 * 8 6 5 24 24 H 1.09002 * 109.46777 * 180.02562 * 8 6 5 25 25 H 0.97001 * 119.99882 * 24.99945 * 9 6 5 26 26 H 0.96997 * 120.00234 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4418 0.7124 -0.0005 5 6 3.5299 -0.6211 -0.0003 6 6 4.7970 -1.4369 -0.0014 7 1 4.5649 -2.4682 -0.2673 8 6 5.4288 -1.3994 1.3915 9 7 5.7356 -0.8799 -0.9786 10 6 6.6972 -1.6791 -1.5370 11 1 6.7638 -2.7199 -1.2566 12 6 7.5869 -1.1512 -2.4626 13 7 7.5059 0.1174 -2.8038 14 14 8.8991 -2.2412 -3.2238 15 1 8.2509 -3.3635 -3.9487 16 1 9.7147 -1.4437 -4.1744 17 1 9.7743 -2.7831 -2.1535 18 7 2.3030 -1.0841 -0.0046 19 1 -0.3634 0.0005 -1.0276 20 1 -0.3633 -0.8903 0.5135 21 1 -0.3634 0.8898 0.5143 22 1 5.6609 -0.3681 1.6575 23 1 4.7305 -1.8137 2.1186 24 1 6.3455 -1.9891 1.3906 25 1 5.6759 0.0550 -1.2301 26 1 8.1273 0.4862 -3.4508 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306517240.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:49 Heat of formation + Delta-G solvation = 73.723387 kcal Electronic energy + Delta-G solvation = -12269.984169 eV Core-core repulsion = 9966.458222 eV Total energy + Delta-G solvation = -2303.525948 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -45.10700 -36.09761 -35.54921 -32.81458 -31.26475 -28.89840 -28.52227 -24.70381 -23.28168 -22.69865 -20.06412 -17.65379 -17.61108 -16.80388 -15.08443 -14.53291 -13.92020 -13.54152 -13.46997 -12.94990 -12.79131 -12.50807 -11.96772 -11.67561 -11.06416 -10.97663 -10.92255 -10.82742 -10.56679 -10.23005 -9.88453 -9.48219 -9.08314 -7.21707 -5.89435 -3.23060 1.59870 2.60146 3.33141 3.40682 3.43430 3.44741 3.96705 4.35833 4.53758 5.23794 5.40293 5.42647 5.52276 5.57881 5.77482 5.89659 5.97616 6.19655 6.27752 6.39300 6.52331 6.80508 7.56950 8.24094 8.59330 9.37611 9.83985 10.20589 11.31964 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.062421 B = 0.008495 C = 0.008175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.456774 B = 3295.296156 C = 3424.323184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.156 3.844 3 N -0.397 5.397 4 O 0.079 5.921 5 C 0.208 3.792 6 C 0.262 3.738 7 H 0.093 0.907 8 C -0.165 4.165 9 N -0.716 5.716 10 C -0.254 4.254 11 H 0.078 0.922 12 C -0.004 4.004 13 N -0.925 5.925 14 Si 0.914 3.086 15 H -0.284 1.284 16 H -0.290 1.290 17 H -0.283 1.283 18 N -0.498 5.498 19 H 0.084 0.916 20 H 0.087 0.913 21 H 0.082 0.918 22 H 0.056 0.944 23 H 0.046 0.954 24 H 0.076 0.924 25 H 0.391 0.609 26 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.904 -1.772 6.315 11.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.116 4.116 3 N -0.108 5.108 4 O 0.023 5.977 5 C -0.013 4.013 6 C 0.149 3.851 7 H 0.111 0.889 8 C -0.226 4.226 9 N -0.359 5.359 10 C -0.384 4.384 11 H 0.096 0.904 12 C -0.201 4.201 13 N -0.571 5.571 14 Si 0.744 3.256 15 H -0.210 1.210 16 H -0.216 1.216 17 H -0.209 1.209 18 N -0.233 5.233 19 H 0.103 0.897 20 H 0.106 0.894 21 H 0.101 0.899 22 H 0.075 0.925 23 H 0.065 0.935 24 H 0.095 0.905 25 H 0.225 0.775 26 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.409 -1.374 6.217 11.361 hybrid contribution 0.830 -0.208 -0.604 1.048 sum -8.578 -1.582 5.612 10.372 Atomic orbital electron populations 1.20043 0.83486 1.04078 1.03912 1.25848 1.00352 0.84137 1.01311 1.74577 0.89759 1.24302 1.22178 1.85285 1.21765 1.25268 1.65359 1.29936 0.97486 0.81728 0.92184 1.18974 0.80157 0.93653 0.92315 0.88925 1.22483 1.01385 1.02660 0.96032 1.42430 1.34140 1.11492 1.47845 1.19159 1.06881 0.93312 1.19067 0.90445 1.24818 0.99685 0.96229 0.99384 1.69670 1.39447 1.12035 1.35982 0.86185 0.81259 0.79325 0.78876 1.21000 1.21577 1.20916 1.71872 0.99798 1.29372 1.22225 0.89700 0.89392 0.89934 0.92458 0.93529 0.90472 0.77457 0.93058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.66 10.51 36.01 0.38 -0.28 15 2 C 0.16 2.69 8.22 -156.37 -1.28 1.41 15 3 N -0.40 -7.60 12.16 30.89 0.38 -7.23 15 4 O 0.08 1.60 11.13 18.11 0.20 1.80 15 5 C 0.21 4.09 7.26 -13.06 -0.09 4.00 15 6 C 0.26 5.19 3.43 -69.08 -0.24 4.96 15 7 H 0.09 1.80 8.08 -51.93 -0.42 1.38 15 8 C -0.16 -2.81 9.47 37.16 0.35 -2.46 15 9 N -0.72 -17.52 5.11 -54.55 -0.28 -17.80 15 10 C -0.25 -6.72 9.93 -15.06 -0.15 -6.87 15 11 H 0.08 1.93 7.83 -52.49 -0.41 1.52 15 12 C 0.00 -0.10 5.50 -17.43 -0.10 -0.20 15 13 N -0.93 -27.25 13.06 55.49 0.72 -26.53 15 14 Si 0.91 21.54 29.55 -169.99 -5.02 16.52 15 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 16 H -0.29 -6.94 7.11 56.52 0.40 -6.53 15 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 18 N -0.50 -9.40 11.55 -9.87 -0.11 -9.51 15 19 H 0.08 0.88 8.14 -51.93 -0.42 0.45 15 20 H 0.09 0.87 8.14 -51.93 -0.42 0.45 15 21 H 0.08 0.81 8.14 -51.92 -0.42 0.39 15 22 H 0.06 0.99 8.14 -51.93 -0.42 0.57 15 23 H 0.05 0.68 8.14 -51.93 -0.42 0.26 15 24 H 0.08 1.32 8.14 -51.93 -0.42 0.90 15 25 H 0.39 10.34 7.64 -40.82 -0.31 10.02 15 26 H 0.26 7.40 8.31 -40.82 -0.34 7.06 15 LS Contribution 238.92 15.07 3.60 3.60 Total: -1.00 -29.95 238.92 -4.46 -34.41 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -2.81 Total: 4.17 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -1.13 Total: 0.56 kcal Atomic # 7 Polarization: -61.77 SS G_CDS: 0.71 Total: -61.07 kcal Atomic # 8 Polarization: 1.60 SS G_CDS: 0.20 Total: 1.80 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -29.95 -4.46 -34.41 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306517240.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.137 kcal (2) G-P(sol) polarization free energy of solvation -29.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds