Wall clock time and date at job start Sun Mar 29 2020 21:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29946 * 126.28685 * 2 1 4 4 O 1.21295 * 110.25317 * 180.02562 * 3 2 1 5 5 C 1.33640 * 109.81082 * 359.97438 * 4 3 2 6 6 C 1.50706 * 126.55413 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.47161 * 195.02505 * 6 5 4 8 8 C 1.52997 * 109.47103 * 75.02471 * 6 5 4 9 9 N 1.46500 * 109.46949 * 315.02489 * 6 5 4 10 10 C 1.36935 * 120.00170 * 205.00239 * 9 6 5 11 11 H 1.07997 * 119.99667 * 359.97438 * 10 9 6 12 12 C 1.38815 * 120.00097 * 180.02562 * 10 9 6 13 13 N 1.31618 * 119.99999 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00056 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47086 * 59.99298 * 14 12 10 16 16 H 1.48497 * 109.47034 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46755 * 299.99537 * 14 12 10 18 18 N 1.31129 * 106.89892 * 0.22620 * 5 4 3 19 19 H 1.08996 * 109.47448 * 89.97340 * 1 2 3 20 20 H 1.09007 * 109.46621 * 209.97814 * 1 2 3 21 21 H 1.09007 * 109.47167 * 329.97105 * 1 2 3 22 22 H 1.09000 * 109.47140 * 300.00046 * 8 6 5 23 23 H 1.08992 * 109.47280 * 59.99899 * 8 6 5 24 24 H 1.09002 * 109.46777 * 180.02562 * 8 6 5 25 25 H 0.97001 * 119.99882 * 24.99945 * 9 6 5 26 26 H 0.96997 * 120.00234 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4418 0.7124 -0.0005 5 6 3.5299 -0.6211 -0.0003 6 6 4.7970 -1.4369 -0.0014 7 1 4.5649 -2.4682 -0.2673 8 6 5.4288 -1.3994 1.3915 9 7 5.7356 -0.8799 -0.9786 10 6 6.6972 -1.6791 -1.5370 11 1 6.7638 -2.7199 -1.2566 12 6 7.5869 -1.1512 -2.4626 13 7 7.5059 0.1174 -2.8038 14 14 8.8991 -2.2412 -3.2238 15 1 8.2509 -3.3635 -3.9487 16 1 9.7147 -1.4437 -4.1744 17 1 9.7743 -2.7831 -2.1535 18 7 2.3030 -1.0841 -0.0046 19 1 -0.3634 0.0005 -1.0276 20 1 -0.3633 -0.8903 0.5135 21 1 -0.3634 0.8898 0.5143 22 1 5.6609 -0.3681 1.6575 23 1 4.7305 -1.8137 2.1186 24 1 6.3455 -1.9891 1.3906 25 1 5.6759 0.0550 -1.2301 26 1 8.1273 0.4862 -3.4508 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306517240.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:49 Heat of formation + Delta-G solvation = 51.669329 kcal Electronic energy + Delta-G solvation = -12270.940505 eV Core-core repulsion = 9966.458222 eV Total energy + Delta-G solvation = -2304.482283 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -46.56205 -37.78164 -36.99757 -34.58217 -32.88955 -30.36618 -29.95638 -26.42723 -24.97827 -24.17517 -21.56540 -19.54972 -19.11125 -18.33011 -16.79330 -16.34435 -15.52476 -14.94720 -14.65150 -14.46055 -14.28848 -13.78153 -13.30251 -13.22258 -12.76863 -12.68699 -12.51942 -12.30754 -12.17290 -12.00601 -11.80429 -11.11321 -10.87025 -9.20446 -7.96837 -5.31277 0.09740 1.19609 1.52725 1.55491 1.61488 1.83463 2.48628 2.71596 3.10192 3.39184 3.83497 3.94287 4.34173 4.40073 4.55950 4.59072 4.67827 4.86570 4.95007 5.02130 5.11566 5.38513 5.51289 6.19312 7.11063 7.28375 7.89248 8.16276 9.25923 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.062421 B = 0.008495 C = 0.008175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.456774 B = 3295.296156 C = 3424.323184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.163 3.837 3 N -0.416 5.416 4 O 0.055 5.945 5 C 0.202 3.798 6 C 0.260 3.740 7 H 0.101 0.899 8 C -0.153 4.153 9 N -0.732 5.732 10 C -0.250 4.250 11 H 0.093 0.907 12 C -0.068 4.068 13 N -0.968 5.968 14 Si 0.980 3.020 15 H -0.276 1.276 16 H -0.300 1.300 17 H -0.271 1.271 18 N -0.503 5.503 19 H 0.101 0.899 20 H 0.108 0.892 21 H 0.102 0.898 22 H 0.050 0.950 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.377 0.623 26 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.947 -3.073 7.053 12.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.110 4.110 3 N -0.131 5.131 4 O 0.004 5.996 5 C -0.019 4.019 6 C 0.149 3.851 7 H 0.118 0.882 8 C -0.214 4.214 9 N -0.374 5.374 10 C -0.380 4.380 11 H 0.110 0.890 12 C -0.261 4.261 13 N -0.618 5.618 14 Si 0.808 3.192 15 H -0.202 1.202 16 H -0.226 1.226 17 H -0.197 1.197 18 N -0.239 5.239 19 H 0.120 0.880 20 H 0.127 0.873 21 H 0.120 0.880 22 H 0.069 0.931 23 H 0.094 0.906 24 H 0.096 0.904 25 H 0.209 0.791 26 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.452 -2.715 6.998 12.868 hybrid contribution 0.992 0.176 -0.759 1.261 sum -9.460 -2.539 6.240 11.614 Atomic orbital electron populations 1.20374 0.79529 1.06089 1.05549 1.26861 1.02410 0.83007 0.98696 1.74590 0.89546 1.25175 1.23781 1.85266 1.22659 1.25503 1.66142 1.29827 0.97776 0.81791 0.92553 1.19163 0.79610 0.93623 0.92664 0.88171 1.22327 1.01800 1.02568 0.94656 1.42566 1.35084 1.10807 1.48901 1.19624 1.06525 0.93976 1.17902 0.88957 1.25656 1.02308 0.97434 1.00674 1.69840 1.40691 1.13986 1.37241 0.85132 0.78657 0.77495 0.77943 1.20220 1.22629 1.19702 1.71907 0.99612 1.30015 1.22355 0.88047 0.87348 0.87969 0.93093 0.90632 0.90422 0.79122 0.93819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.14 10.51 71.24 0.75 -0.39 15 2 C 0.16 5.31 8.22 138.46 1.14 6.45 15 3 N -0.42 -15.60 12.16 -60.34 -0.73 -16.33 15 4 O 0.05 2.23 11.13 74.87 0.83 3.07 15 5 C 0.20 7.80 7.26 88.38 0.64 8.44 15 6 C 0.26 10.09 3.43 44.25 0.15 10.24 15 7 H 0.10 3.74 8.08 -2.39 -0.02 3.72 15 8 C -0.15 -4.97 9.47 71.98 0.68 -4.29 15 9 N -0.73 -35.90 5.11 -326.50 -1.67 -37.57 15 10 C -0.25 -13.09 9.93 84.03 0.83 -12.25 15 11 H 0.09 4.46 7.83 -2.91 -0.02 4.43 15 12 C -0.07 -3.75 5.50 84.86 0.47 -3.29 15 13 N -0.97 -58.28 13.06 21.65 0.28 -58.00 15 14 Si 0.98 44.28 29.55 68.60 2.03 46.31 15 15 H -0.28 -12.02 7.11 99.48 0.71 -11.31 15 16 H -0.30 -13.90 7.11 99.48 0.71 -13.19 15 17 H -0.27 -11.63 7.11 99.48 0.71 -10.92 15 18 N -0.50 -18.18 11.55 -303.21 -3.50 -21.68 15 19 H 0.10 1.75 8.14 -2.39 -0.02 1.73 15 20 H 0.11 1.74 8.14 -2.38 -0.02 1.72 15 21 H 0.10 1.66 8.14 -2.38 -0.02 1.64 15 22 H 0.05 1.71 8.14 -2.39 -0.02 1.69 15 23 H 0.07 2.02 8.14 -2.39 -0.02 2.00 15 24 H 0.08 2.52 8.14 -2.39 -0.02 2.50 15 25 H 0.38 20.41 7.64 -92.71 -0.71 19.70 15 26 H 0.25 14.83 8.31 -92.71 -0.77 14.06 15 Total: -1.00 -63.91 238.92 2.38 -61.53 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.48 Total: 17.77 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 4.66 Total: 4.91 kcal Atomic # 7 Polarization: -127.96 SS G_CDS: -5.62 Total: -133.58 kcal Atomic # 8 Polarization: 2.23 SS G_CDS: 0.83 Total: 3.07 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -63.91 2.38 -61.53 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306517240.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.198 kcal (2) G-P(sol) polarization free energy of solvation -63.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds