Wall clock time and date at job start Sun Mar 29 2020 22:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34774 * 119.99581 * 2 1 4 4 O 1.21688 * 120.00067 * 179.97438 * 3 2 1 5 5 C 1.46372 * 120.00290 * 0.02562 * 3 2 1 6 6 H 1.08000 * 120.00166 * 359.97438 * 5 3 2 7 7 C 1.40050 * 120.00288 * 179.72132 * 5 3 2 8 8 N 1.30675 * 119.99738 * 0.27696 * 7 5 3 9 9 Si 1.86797 * 120.00114 * 180.27220 * 7 5 3 10 10 H 1.48499 * 109.47200 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46717 * 120.00551 * 9 7 5 12 12 H 1.48503 * 109.47046 * 240.00007 * 9 7 5 13 13 C 1.46493 * 120.00203 * 180.02562 * 2 1 3 14 14 H 1.08997 * 115.55143 * 148.16282 * 13 2 1 15 15 C 1.53002 * 117.50246 * 2.44787 * 13 2 1 16 16 C 1.52998 * 60.00234 * 252.51739 * 15 13 2 17 17 C 1.53001 * 117.49211 * 252.51103 * 16 15 13 18 18 C 1.52995 * 117.52099 * 107.48199 * 16 15 13 19 19 H 1.09003 * 109.46671 * 87.36096 * 1 2 3 20 20 H 1.09002 * 109.46955 * 207.35182 * 1 2 3 21 21 H 1.08999 * 109.47298 * 327.35454 * 1 2 3 22 22 H 0.96999 * 120.00241 * 179.97438 * 8 7 5 23 23 H 1.09000 * 117.49565 * 0.02562 * 15 13 2 24 24 H 1.08993 * 117.50078 * 145.01784 * 15 13 2 25 25 H 1.08999 * 109.47087 * 128.62355 * 17 16 15 26 26 H 1.09004 * 109.47286 * 248.61770 * 17 16 15 27 27 H 1.08997 * 109.47730 * 8.62217 * 17 16 15 28 28 H 1.08998 * 109.46846 * 358.74693 * 18 16 15 29 29 H 1.09003 * 109.46804 * 118.74809 * 18 16 15 30 30 H 1.08995 * 109.46786 * 238.74388 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3557 1.1673 0.0005 5 6 1.4070 2.4348 0.0006 6 1 0.3270 2.4348 0.0006 7 6 2.1071 3.6477 0.0065 8 7 3.4139 3.6478 0.0060 9 14 1.1730 5.2654 0.0149 10 1 -0.2869 4.9939 0.0146 11 1 1.5323 6.0380 1.2312 12 1 1.5314 6.0502 -1.1938 13 6 2.1976 -1.2686 -0.0006 14 1 3.1561 -1.2578 -0.5193 15 6 1.3767 -2.5585 -0.0591 16 6 2.0759 -2.1551 1.2406 17 6 3.3090 -2.9590 1.6581 18 6 1.1990 -1.6485 2.3874 19 1 -0.3633 0.0473 -1.0266 20 1 -0.3633 -0.9128 0.4722 21 1 -0.3634 0.8653 0.5544 22 1 3.8989 4.4878 0.0097 23 1 0.2915 -2.4630 -0.0976 24 1 1.7949 -3.3964 -0.6167 25 1 4.1323 -2.2771 1.8708 26 1 3.0786 -3.5401 2.5511 27 1 3.5945 -3.6324 0.8500 28 1 0.1566 -1.6354 2.0691 29 1 1.3081 -2.3093 3.2474 30 1 1.5077 -0.6401 2.6626 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306606965.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:05 Heat of formation + Delta-G solvation = -36.162274 kcal Electronic energy + Delta-G solvation = -12863.724165 eV Core-core repulsion = 10658.973561 eV Total energy + Delta-G solvation = -2204.750604 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.45787 -38.24015 -34.78333 -34.54025 -30.10416 -28.59803 -28.11024 -27.30960 -23.32532 -21.10347 -19.63282 -18.46938 -17.75595 -16.73935 -16.01165 -15.76887 -14.85645 -14.69572 -14.44074 -13.91557 -13.64877 -13.40867 -13.12096 -12.96406 -12.89121 -12.75794 -12.49623 -12.31554 -11.98304 -11.81644 -11.21251 -10.94270 -10.70845 -9.80289 -8.85133 -8.29595 -6.84890 1.38747 1.38937 1.57050 2.22519 2.42011 2.77904 2.90538 3.61626 3.81795 4.01581 4.03913 4.26963 4.42084 4.70723 4.75763 4.77829 4.90757 4.97337 5.02688 5.09153 5.09413 5.14776 5.30034 5.35477 5.50194 5.74050 6.13937 6.45891 6.86521 7.42906 8.47583 8.67379 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.056045 B = 0.010069 C = 0.009421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.481362 B = 2780.108599 C = 2971.339789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.618 5.618 3 C 0.538 3.462 4 O -0.632 6.632 5 C -0.567 4.567 6 H 0.093 0.907 7 C 0.026 3.974 8 N -0.823 5.823 9 Si 0.997 3.003 10 H -0.244 1.244 11 H -0.269 1.269 12 H -0.269 1.269 13 C 0.066 3.934 14 H 0.079 0.921 15 C -0.149 4.149 16 C -0.154 4.154 17 C -0.106 4.106 18 C -0.102 4.102 19 H 0.043 0.957 20 H 0.084 0.916 21 H 0.062 0.938 22 H 0.273 0.727 23 H 0.112 0.888 24 H 0.117 0.883 25 H 0.034 0.966 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.161 -8.802 2.184 12.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.352 5.352 3 C 0.344 3.656 4 O -0.520 6.520 5 C -0.603 4.603 6 H 0.111 0.889 7 C -0.189 4.189 8 N -0.453 5.453 9 Si 0.816 3.184 10 H -0.167 1.167 11 H -0.194 1.194 12 H -0.194 1.194 13 C -0.040 4.040 14 H 0.097 0.903 15 C -0.186 4.186 16 C -0.156 4.156 17 C -0.164 4.164 18 C -0.159 4.159 19 H 0.061 0.939 20 H 0.102 0.898 21 H 0.081 0.919 22 H 0.083 0.917 23 H 0.130 0.870 24 H 0.135 0.865 25 H 0.053 0.947 26 H 0.098 0.902 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -7.370 -8.711 2.173 11.616 hybrid contribution 0.209 0.888 -0.139 0.923 sum -7.162 -7.823 2.034 10.799 Atomic orbital electron populations 1.21692 0.79665 1.02532 1.00878 1.47237 1.06397 1.03748 1.77773 1.18700 0.86656 0.84078 0.76129 1.90533 1.16417 1.87599 1.57419 1.21551 0.94850 0.89689 1.54241 0.88892 1.27045 0.95523 1.05073 0.91230 1.70217 1.09631 1.28806 1.36635 0.84979 0.79500 0.75359 0.78514 1.16681 1.19391 1.19356 1.21469 0.97195 0.82840 1.02447 0.90294 1.23707 0.99770 0.96195 0.98973 1.22210 0.99976 1.02621 0.90831 1.21303 0.94521 0.98308 1.02238 1.21227 0.98583 0.99403 0.96670 0.93853 0.89804 0.91938 0.91662 0.86960 0.86529 0.94678 0.90223 0.91297 0.91291 0.90603 0.95766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.46 8.99 127.77 1.15 4.61 16 2 N -0.62 -29.29 2.78 -827.67 -2.30 -31.59 16 3 C 0.54 32.54 7.61 86.36 0.66 33.19 16 4 O -0.63 -44.24 14.81 -4.31 -0.06 -44.30 16 5 C -0.57 -32.77 8.73 24.83 0.22 -32.55 16 6 H 0.09 4.79 6.05 -2.91 -0.02 4.77 16 7 C 0.03 1.48 5.50 85.30 0.47 1.95 16 8 N -0.82 -51.64 11.83 21.84 0.26 -51.38 16 9 Si 1.00 41.52 29.56 68.60 2.03 43.54 16 10 H -0.24 -9.28 7.11 99.48 0.71 -8.57 16 11 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 12 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 13 C 0.07 2.76 5.82 45.00 0.26 3.02 16 14 H 0.08 3.78 7.81 -2.39 -0.02 3.76 16 15 C -0.15 -4.25 9.09 30.59 0.28 -3.97 16 16 C -0.15 -5.04 2.70 -52.18 -0.14 -5.18 16 17 C -0.11 -3.03 9.84 71.98 0.71 -2.32 16 18 C -0.10 -3.16 8.78 71.98 0.63 -2.53 16 19 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 20 H 0.08 2.42 4.08 -2.39 -0.01 2.41 16 21 H 0.06 2.36 6.25 -2.39 -0.01 2.35 16 22 H 0.27 15.48 8.29 -92.71 -0.77 14.71 16 23 H 0.11 2.79 6.10 -2.39 -0.01 2.78 16 24 H 0.12 2.75 8.05 -2.39 -0.02 2.73 16 25 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.08 1.83 7.87 -2.39 -0.02 1.81 16 27 H 0.07 1.70 7.90 -2.39 -0.02 1.68 16 28 H 0.07 1.88 6.03 -2.39 -0.01 1.86 16 29 H 0.08 1.92 7.82 -2.39 -0.02 1.90 16 30 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -77.25 248.04 5.28 -71.97 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 1.13 Total: 15.54 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: 4.23 Total: -3.78 kcal Atomic # 7 Polarization: -80.93 SS G_CDS: -2.04 Total: -82.97 kcal Atomic # 8 Polarization: -44.24 SS G_CDS: -0.06 Total: -44.30 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.54 kcal Total: -77.25 5.28 -71.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306606965.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.809 kcal (2) G-P(sol) polarization free energy of solvation -77.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds