Wall clock time and date at job start Sun Mar 29 2020 22:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34774 * 119.99815 * 2 1 4 4 O 1.21690 * 119.99450 * 180.02562 * 3 2 1 5 5 C 1.46368 * 120.00240 * 0.02562 * 3 2 1 6 6 H 1.08004 * 120.00361 * 0.27161 * 5 3 2 7 7 C 1.40055 * 119.99884 * 179.97438 * 5 3 2 8 8 N 1.30668 * 120.00208 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99830 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47093 * 60.00235 * 9 7 5 11 11 H 1.48495 * 109.47002 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47239 * 299.99955 * 9 7 5 13 13 C 1.46499 * 119.99791 * 180.02562 * 2 1 3 14 14 H 1.09005 * 115.54685 * 205.58380 * 13 2 1 15 15 C 1.52999 * 117.49821 * 351.24591 * 13 2 1 16 16 C 1.52997 * 117.50186 * 59.90768 * 13 2 1 17 17 C 1.53000 * 117.50101 * 359.97438 * 16 13 2 18 18 C 1.52998 * 117.49900 * 145.02469 * 16 13 2 19 19 H 1.09002 * 109.47335 * 89.99462 * 1 2 3 20 20 H 1.08996 * 109.47068 * 210.00030 * 1 2 3 21 21 H 1.09001 * 109.47076 * 330.00058 * 1 2 3 22 22 H 0.96990 * 120.00456 * 179.97438 * 8 7 5 23 23 H 1.08997 * 117.50067 * 214.98434 * 15 13 2 24 24 H 1.09004 * 117.50304 * 0.02562 * 15 13 2 25 25 H 1.08998 * 109.46780 * 59.99733 * 17 16 13 26 26 H 1.08995 * 109.47500 * 179.97438 * 17 16 13 27 27 H 1.09006 * 109.47178 * 300.00069 * 17 16 13 28 28 H 1.09000 * 109.47325 * 60.00013 * 18 16 13 29 29 H 1.09001 * 109.47296 * 180.02562 * 18 16 13 30 30 H 1.09003 * 109.46832 * 299.99991 * 18 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3558 1.1671 -0.0005 5 6 1.4070 2.4348 0.0006 6 1 0.3270 2.4349 0.0054 7 6 2.1074 3.6477 0.0011 8 7 3.4140 3.6477 0.0006 9 14 1.1733 5.2655 0.0026 10 1 0.3201 5.3433 1.2155 11 1 2.1383 6.3941 0.0036 12 1 0.3191 5.3450 -1.2096 13 6 2.1975 -1.2687 -0.0006 14 1 3.2007 -1.2325 0.4241 15 6 1.3890 -2.5513 0.2054 16 6 1.9614 -2.2203 -1.1752 17 6 0.9780 -1.7743 -2.2591 18 6 3.1515 -3.0486 -1.6634 19 1 -0.3634 0.0001 -1.0277 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3633 0.8900 0.5138 22 1 3.8990 4.4876 0.0006 23 1 1.8605 -3.3590 0.7652 24 1 0.3121 -2.4511 0.3409 25 1 1.3286 -0.8447 -2.7074 26 1 0.9099 -2.5446 -3.0272 27 1 -0.0048 -1.6155 -1.8150 28 1 3.5136 -3.6785 -0.8509 29 1 2.8394 -3.6759 -2.4984 30 1 3.9494 -2.3813 -1.9892 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306606966.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:07 Heat of formation + Delta-G solvation = -35.423034 kcal Electronic energy + Delta-G solvation = -12853.148792 eV Core-core repulsion = 10648.430244 eV Total energy + Delta-G solvation = -2204.718548 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.46077 -38.24689 -34.77378 -34.53703 -30.14311 -28.65014 -28.10886 -27.24469 -23.32934 -21.08917 -19.65099 -18.47493 -17.77028 -16.70177 -16.07257 -15.72525 -14.89327 -14.74061 -14.43000 -13.88954 -13.58664 -13.45921 -13.13855 -13.00133 -12.84569 -12.68849 -12.37598 -12.26959 -12.06547 -11.83678 -11.29869 -10.91578 -10.70062 -9.81061 -8.81950 -8.29277 -6.84916 1.38788 1.42578 1.54221 2.22791 2.41578 2.77768 2.91938 3.62310 3.82027 4.01273 4.04865 4.26909 4.43707 4.71684 4.75297 4.81374 4.88018 4.98983 5.01834 5.08215 5.10281 5.13810 5.30136 5.35752 5.49971 5.74392 6.13664 6.45854 6.86306 7.42655 8.47219 8.67142 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.056905 B = 0.009965 C = 0.009317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.929858 B = 2809.199390 C = 3004.632593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.617 5.617 3 C 0.538 3.462 4 O -0.633 6.633 5 C -0.568 4.568 6 H 0.094 0.906 7 C 0.026 3.974 8 N -0.823 5.823 9 Si 0.997 3.003 10 H -0.252 1.252 11 H -0.275 1.275 12 H -0.253 1.253 13 C 0.066 3.934 14 H 0.081 0.919 15 C -0.154 4.154 16 C -0.153 4.153 17 C -0.104 4.104 18 C -0.107 4.107 19 H 0.048 0.952 20 H 0.081 0.919 21 H 0.064 0.936 22 H 0.274 0.726 23 H 0.115 0.885 24 H 0.113 0.887 25 H 0.025 0.975 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.353 -8.773 -1.701 12.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.351 5.351 3 C 0.344 3.656 4 O -0.521 6.521 5 C -0.605 4.605 6 H 0.112 0.888 7 C -0.188 4.188 8 N -0.453 5.453 9 Si 0.816 3.184 10 H -0.176 1.176 11 H -0.200 1.200 12 H -0.177 1.177 13 C -0.040 4.040 14 H 0.099 0.901 15 C -0.191 4.191 16 C -0.155 4.155 17 C -0.161 4.161 18 C -0.164 4.164 19 H 0.067 0.933 20 H 0.100 0.900 21 H 0.082 0.918 22 H 0.084 0.916 23 H 0.133 0.867 24 H 0.131 0.869 25 H 0.044 0.956 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -7.553 -8.677 -1.689 11.627 hybrid contribution 0.200 0.856 0.064 0.882 sum -7.353 -7.820 -1.625 10.856 Atomic orbital electron populations 1.21779 0.79653 1.02625 1.01053 1.47226 1.06447 1.03745 1.77684 1.18695 0.86657 0.84087 0.76131 1.90532 1.16423 1.87598 1.57520 1.21504 0.94875 0.89682 1.54407 0.88809 1.27048 0.95521 1.05073 0.91207 1.70198 1.09637 1.28958 1.36464 0.85080 0.78231 0.74653 0.80401 1.17625 1.19981 1.17705 1.21485 0.96579 0.82284 1.03614 0.90071 1.23698 1.00675 0.96771 0.97973 1.22220 1.00126 1.02368 0.90812 1.21297 0.97723 0.99883 0.97170 1.21296 0.95078 0.98217 1.01811 0.93345 0.90033 0.91757 0.91636 0.86663 0.86936 0.95574 0.90519 0.91304 0.91389 0.90209 0.94571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.32 8.49 127.77 1.08 4.41 16 2 N -0.62 -29.27 2.88 -827.69 -2.39 -31.66 16 3 C 0.54 32.53 7.61 86.36 0.66 33.19 16 4 O -0.63 -44.32 14.73 -4.32 -0.06 -44.38 16 5 C -0.57 -32.81 8.74 24.83 0.22 -32.59 16 6 H 0.09 4.80 5.99 -2.91 -0.02 4.78 16 7 C 0.03 1.50 5.50 85.31 0.47 1.97 16 8 N -0.82 -51.61 11.83 21.84 0.26 -51.35 16 9 Si 1.00 41.39 29.56 68.60 2.03 43.42 16 10 H -0.25 -9.77 7.11 99.48 0.71 -9.07 16 11 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 12 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 13 C 0.07 2.76 5.92 44.99 0.27 3.02 16 14 H 0.08 3.92 7.67 -2.38 -0.02 3.90 16 15 C -0.15 -4.41 9.10 30.62 0.28 -4.13 16 16 C -0.15 -4.97 2.70 -52.16 -0.14 -5.11 16 17 C -0.10 -3.16 8.58 71.98 0.62 -2.55 16 18 C -0.11 -3.01 9.85 71.98 0.71 -2.30 16 19 H 0.05 1.63 6.40 -2.39 -0.02 1.62 16 20 H 0.08 2.34 5.80 -2.39 -0.01 2.33 16 21 H 0.06 2.42 6.09 -2.39 -0.01 2.41 16 22 H 0.27 15.57 8.29 -92.72 -0.77 14.80 16 23 H 0.12 2.77 8.05 -2.39 -0.02 2.75 16 24 H 0.11 2.82 5.93 -2.38 -0.01 2.81 16 25 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.08 1.87 7.92 -2.39 -0.02 1.85 16 27 H 0.07 1.91 5.64 -2.38 -0.01 1.89 16 28 H 0.07 1.68 7.90 -2.39 -0.02 1.66 16 29 H 0.08 1.81 7.92 -2.39 -0.02 1.79 16 30 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -77.05 246.71 5.13 -71.92 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 1.13 Total: 16.13 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 4.16 Total: -4.09 kcal Atomic # 7 Polarization: -80.88 SS G_CDS: -2.13 Total: -83.01 kcal Atomic # 8 Polarization: -44.32 SS G_CDS: -0.06 Total: -44.38 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -77.05 5.13 -71.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306606966.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.497 kcal (2) G-P(sol) polarization free energy of solvation -77.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds