Wall clock time and date at job start Sun Mar 29 2020 21:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99798 * 2 1 4 4 H 1.48501 * 109.46900 * 269.99843 * 3 2 1 5 5 H 1.48494 * 109.47315 * 29.99847 * 3 2 1 6 6 H 1.48498 * 109.46932 * 150.00309 * 3 2 1 7 7 C 1.37873 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00200 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00245 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47386 * 180.02562 * 9 7 2 11 11 C 1.48538 * 111.00123 * 287.40169 * 10 9 7 12 12 C 1.54933 * 103.22579 * 200.28130 * 11 10 9 13 13 C 1.54593 * 102.92591 * 37.41127 * 12 11 10 14 14 H 1.08998 * 110.30989 * 96.95784 * 13 12 11 15 15 C 1.52998 * 110.30979 * 219.12709 * 13 12 11 16 16 C 1.53000 * 117.49999 * 244.46020 * 15 13 12 17 17 C 1.53002 * 117.50003 * 175.79803 * 15 13 12 18 18 C 1.47899 * 111.00068 * 170.00327 * 10 9 7 19 19 H 0.96999 * 120.00278 * 359.97438 * 1 2 3 20 20 H 1.09008 * 109.46874 * 60.00128 * 9 7 2 21 21 H 1.09000 * 109.47335 * 300.00645 * 9 7 2 22 22 H 1.09007 * 110.66246 * 318.71191 * 11 10 9 23 23 H 1.08993 * 110.66698 * 81.83885 * 11 10 9 24 24 H 1.09007 * 110.72333 * 279.05054 * 12 11 10 25 25 H 1.09004 * 110.72411 * 155.77248 * 12 11 10 26 26 H 1.09004 * 115.55056 * 30.13274 * 15 13 12 27 27 H 1.08993 * 117.49897 * 0.02562 * 16 15 13 28 28 H 1.09001 * 117.49405 * 145.02016 * 16 15 13 29 29 H 1.08995 * 117.50448 * 214.98038 * 17 15 13 30 30 H 1.09006 * 117.49681 * 359.97438 * 17 15 13 31 31 H 1.09004 * 109.91646 * 26.49394 * 18 10 9 32 32 H 1.09001 * 110.08341 * 265.29071 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 2.8668 -3.7508 -1.3238 12 6 3.3884 -5.2097 -1.3121 13 6 2.2629 -5.9735 -0.5775 14 1 1.5890 -6.4382 -1.2971 15 6 2.8590 -7.0312 0.3535 16 6 2.5592 -8.4984 0.0396 17 6 1.8913 -7.8198 1.2382 18 6 1.5166 -4.9022 0.2392 19 1 -0.4850 0.8400 0.0004 20 1 0.6241 -2.5567 -0.8904 21 1 0.6247 -2.5571 0.8896 22 1 2.1474 -3.6059 -2.1298 23 1 3.6942 -3.0471 -1.4141 24 1 4.3259 -5.2797 -0.7603 25 1 3.5090 -5.5843 -2.3286 26 1 3.8398 -6.7951 0.7664 27 1 1.9377 -8.7100 -0.8304 28 1 3.3426 -9.2275 0.2463 29 1 2.2354 -8.1029 2.2329 30 1 0.8299 -7.5847 1.1573 31 1 0.4807 -4.8363 -0.0939 32 1 1.5503 -5.1531 1.2994 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306610154.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:50 Heat of formation + Delta-G solvation = 18.453875 kcal Electronic energy + Delta-G solvation = -12280.142906 eV Core-core repulsion = 10240.905209 eV Total energy + Delta-G solvation = -2039.237697 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.81015 -36.25262 -32.92159 -30.71396 -28.17833 -26.38473 -22.91550 -22.15395 -21.58285 -20.17689 -19.22141 -16.37549 -15.68682 -15.11695 -14.70548 -14.01882 -13.56654 -13.22184 -12.36491 -12.19283 -11.75282 -11.57372 -11.45787 -11.15342 -10.96892 -10.71887 -10.63987 -10.35526 -10.18017 -9.94760 -9.82491 -9.61440 -9.09787 -8.39784 -7.26007 -5.99169 -4.00237 3.34179 3.39992 3.45064 3.90263 4.46195 4.74476 4.99158 4.99236 5.11009 5.30797 5.37238 5.49963 5.67033 5.71051 5.75091 5.93989 5.97581 6.10719 6.17745 6.30253 6.36733 6.45870 6.62447 6.68550 6.74740 7.24422 7.34992 7.84232 8.07565 8.23870 8.57719 9.07935 9.63946 11.11985 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.075600 B = 0.007462 C = 0.007142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.282600 B = 3751.458455 C = 3919.559617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.053 3.947 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.504 4.504 8 H 0.063 0.937 9 C 0.184 3.816 10 N -0.515 5.515 11 C 0.048 3.952 12 C -0.117 4.117 13 C -0.069 4.069 14 H 0.067 0.933 15 C -0.131 4.131 16 C -0.187 4.187 17 C -0.181 4.181 18 C 0.042 3.958 19 H 0.261 0.739 20 H -0.007 1.007 21 H 0.028 0.972 22 H 0.035 0.965 23 H 0.077 0.923 24 H 0.070 0.930 25 H 0.060 0.940 26 H 0.104 0.896 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.032 0.968 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.379 -12.811 -1.148 13.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.148 4.148 3 Si 0.726 3.274 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.542 4.542 8 H 0.081 0.919 9 C 0.058 3.942 10 N -0.239 5.239 11 C -0.081 4.081 12 C -0.155 4.155 13 C -0.088 4.088 14 H 0.085 0.915 15 C -0.150 4.150 16 C -0.224 4.224 17 C -0.218 4.218 18 C -0.087 4.087 19 H 0.070 0.930 20 H 0.010 0.990 21 H 0.046 0.954 22 H 0.053 0.947 23 H 0.095 0.905 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.122 0.878 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.051 0.949 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.585 -12.559 -0.721 13.389 hybrid contribution -0.353 0.793 -0.602 1.057 sum 4.231 -11.766 -1.323 12.574 Atomic orbital electron populations 1.69963 1.06080 1.26712 1.51318 1.25005 0.94873 0.99342 0.95538 0.86488 0.79818 0.83069 0.78000 1.20763 1.21276 1.19763 1.21154 0.93535 0.89912 1.49645 0.91927 1.19889 0.90247 0.88013 0.96064 1.64840 1.29516 1.02240 1.27353 1.23042 0.98681 0.94802 0.91536 1.22587 0.98086 0.95696 0.99153 1.21617 0.96848 0.94552 0.95818 0.91475 1.22378 0.99884 0.91407 1.01283 1.23018 1.03616 0.95802 0.99933 1.22929 0.98951 1.04790 0.95171 1.22865 0.95681 0.90322 0.99808 0.92977 0.98967 0.95358 0.94694 0.90505 0.91144 0.92093 0.87756 0.89156 0.89302 0.89095 0.88844 0.94943 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.29 55.43 0.74 -26.63 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.50 -14.62 8.91 -34.44 -0.31 -14.92 16 8 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 9 C 0.18 4.98 4.47 -4.98 -0.02 4.96 16 10 N -0.51 -11.67 5.23 -231.89 -1.21 -12.88 16 11 C 0.05 0.95 6.12 -1.90 -0.01 0.94 16 12 C -0.12 -1.83 6.61 -24.87 -0.16 -2.00 16 13 C -0.07 -1.06 3.18 -89.26 -0.28 -1.35 16 14 H 0.07 0.98 7.94 -51.93 -0.41 0.56 16 15 C -0.13 -1.73 5.05 -90.62 -0.46 -2.18 16 16 C -0.19 -2.06 10.19 -26.69 -0.27 -2.33 16 17 C -0.18 -2.15 9.59 -26.69 -0.26 -2.41 16 18 C 0.04 0.79 6.13 -2.75 -0.02 0.77 16 19 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 20 H -0.01 -0.21 7.83 -51.92 -0.41 -0.62 16 21 H 0.03 0.82 8.08 -51.93 -0.42 0.40 16 22 H 0.03 0.72 7.81 -51.93 -0.41 0.31 16 23 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 24 H 0.07 1.06 7.64 -51.92 -0.40 0.67 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.10 1.38 7.80 -51.93 -0.40 0.98 16 27 H 0.09 0.96 8.07 -51.93 -0.42 0.54 16 28 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.03 0.63 7.77 -51.93 -0.40 0.23 16 32 H 0.07 1.31 7.31 -51.93 -0.38 0.93 16 LS Contribution 262.17 15.07 3.95 3.95 Total: -1.00 -30.22 262.17 -8.74 -38.96 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: -5.31 Total: -3.35 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: -1.89 Total: -17.07 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: -0.48 Total: -39.51 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.22 -8.74 -38.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306610154.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.412 kcal (2) G-P(sol) polarization free energy of solvation -30.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds