Wall clock time and date at job start Sun Mar 29 2020 21:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99798 * 2 1 4 4 H 1.48501 * 109.46900 * 269.99843 * 3 2 1 5 5 H 1.48494 * 109.47315 * 29.99847 * 3 2 1 6 6 H 1.48498 * 109.46932 * 150.00309 * 3 2 1 7 7 C 1.37873 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00200 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00245 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47386 * 180.02562 * 9 7 2 11 11 C 1.48538 * 111.00123 * 287.40169 * 10 9 7 12 12 C 1.54933 * 103.22579 * 200.28130 * 11 10 9 13 13 C 1.54593 * 102.92591 * 37.41127 * 12 11 10 14 14 H 1.08998 * 110.30989 * 96.95784 * 13 12 11 15 15 C 1.52998 * 110.30979 * 219.12709 * 13 12 11 16 16 C 1.53000 * 117.49999 * 244.46020 * 15 13 12 17 17 C 1.53002 * 117.50003 * 175.79803 * 15 13 12 18 18 C 1.47899 * 111.00068 * 170.00327 * 10 9 7 19 19 H 0.96999 * 120.00278 * 359.97438 * 1 2 3 20 20 H 1.09008 * 109.46874 * 60.00128 * 9 7 2 21 21 H 1.09000 * 109.47335 * 300.00645 * 9 7 2 22 22 H 1.09007 * 110.66246 * 318.71191 * 11 10 9 23 23 H 1.08993 * 110.66698 * 81.83885 * 11 10 9 24 24 H 1.09007 * 110.72333 * 279.05054 * 12 11 10 25 25 H 1.09004 * 110.72411 * 155.77248 * 12 11 10 26 26 H 1.09004 * 115.55056 * 30.13274 * 15 13 12 27 27 H 1.08993 * 117.49897 * 0.02562 * 16 15 13 28 28 H 1.09001 * 117.49405 * 145.02016 * 16 15 13 29 29 H 1.08995 * 117.50448 * 214.98038 * 17 15 13 30 30 H 1.09006 * 117.49681 * 359.97438 * 17 15 13 31 31 H 1.09004 * 109.91646 * 26.49394 * 18 10 9 32 32 H 1.09001 * 110.08341 * 265.29071 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 2.8668 -3.7508 -1.3238 12 6 3.3884 -5.2097 -1.3121 13 6 2.2629 -5.9735 -0.5775 14 1 1.5890 -6.4382 -1.2971 15 6 2.8590 -7.0312 0.3535 16 6 2.5592 -8.4984 0.0396 17 6 1.8913 -7.8198 1.2382 18 6 1.5166 -4.9022 0.2392 19 1 -0.4850 0.8400 0.0004 20 1 0.6241 -2.5567 -0.8904 21 1 0.6247 -2.5571 0.8896 22 1 2.1474 -3.6059 -2.1298 23 1 3.6942 -3.0471 -1.4141 24 1 4.3259 -5.2797 -0.7603 25 1 3.5090 -5.5843 -2.3286 26 1 3.8398 -6.7951 0.7664 27 1 1.9377 -8.7100 -0.8304 28 1 3.3426 -9.2275 0.2463 29 1 2.2354 -8.1029 2.2329 30 1 0.8299 -7.5847 1.1573 31 1 0.4807 -4.8363 -0.0939 32 1 1.5503 -5.1531 1.2994 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306610154.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:50 Heat of formation + Delta-G solvation = -0.613576 kcal Electronic energy + Delta-G solvation = -12280.969733 eV Core-core repulsion = 10240.905209 eV Total energy + Delta-G solvation = -2040.064524 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.19769 -37.53767 -35.02168 -32.44648 -29.68282 -28.38891 -24.73239 -23.17853 -22.90274 -21.79457 -20.52204 -18.55786 -17.10082 -16.65403 -16.20596 -15.63835 -15.04507 -14.94344 -14.25986 -13.76529 -13.44175 -13.04153 -12.85296 -12.60934 -12.49793 -12.30589 -12.27105 -11.98767 -11.82380 -11.50814 -11.30658 -10.95172 -10.67913 -10.63015 -9.12455 -8.23046 -6.34183 1.39575 1.41799 1.53804 2.39234 2.93477 3.09005 3.42195 3.68435 3.83756 3.90884 4.17096 4.31873 4.44070 4.47173 4.56998 4.73721 4.81125 4.85053 4.99353 5.02933 5.06716 5.09282 5.19719 5.25679 5.32648 5.36652 5.44957 5.62857 6.01100 6.27392 6.53465 6.81798 7.36106 8.88548 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.075600 B = 0.007462 C = 0.007142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.282600 B = 3751.458455 C = 3919.559617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.001 4.001 3 Si 0.974 3.026 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.525 4.525 8 H 0.061 0.939 9 C 0.200 3.800 10 N -0.528 5.528 11 C 0.042 3.958 12 C -0.103 4.103 13 C -0.059 4.059 14 H 0.078 0.922 15 C -0.148 4.148 16 C -0.164 4.164 17 C -0.186 4.186 18 C 0.039 3.961 19 H 0.265 0.735 20 H -0.037 1.037 21 H -0.002 1.002 22 H 0.021 0.979 23 H 0.068 0.932 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.105 0.895 27 H 0.097 0.903 28 H 0.108 0.892 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.017 0.983 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.913 -13.750 -1.454 15.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.199 4.199 3 Si 0.798 3.202 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.563 4.563 8 H 0.080 0.920 9 C 0.073 3.927 10 N -0.252 5.252 11 C -0.086 4.086 12 C -0.141 4.141 13 C -0.078 4.078 14 H 0.096 0.904 15 C -0.166 4.166 16 C -0.201 4.201 17 C -0.223 4.223 18 C -0.089 4.089 19 H 0.074 0.926 20 H -0.019 1.019 21 H 0.016 0.984 22 H 0.040 0.960 23 H 0.086 0.914 24 H 0.099 0.901 25 H 0.108 0.892 26 H 0.123 0.877 27 H 0.115 0.885 28 H 0.126 0.874 29 H 0.120 0.880 30 H 0.105 0.895 31 H 0.036 0.964 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.129 -13.524 -1.030 14.883 hybrid contribution -0.876 1.047 -0.494 1.451 sum 5.253 -12.477 -1.524 13.623 Atomic orbital electron populations 1.70094 1.07849 1.28027 1.51752 1.25991 0.95816 1.03448 0.94626 0.85308 0.78491 0.77823 0.78549 1.19586 1.20530 1.18872 1.21446 0.93604 0.91081 1.50199 0.92047 1.19531 0.90259 0.89759 0.93177 1.64735 1.28655 1.02618 1.29227 1.23104 0.97849 0.97986 0.89655 1.22542 0.98218 0.92185 1.01137 1.21532 0.96514 0.93952 0.95827 0.90365 1.22265 1.00125 0.92168 1.02022 1.23098 1.03421 0.94212 0.99396 1.23000 0.98430 1.04695 0.96217 1.22948 0.95279 0.89974 1.00701 0.92590 1.01924 0.98377 0.96028 0.91384 0.90134 0.89208 0.87665 0.88471 0.87395 0.88033 0.89508 0.96407 0.90959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.12 13.29 21.45 0.28 -57.83 16 2 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 3 Si 0.97 45.35 29.54 68.60 2.03 47.38 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 6 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.53 -31.21 8.91 25.60 0.23 -30.98 16 8 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 9 C 0.20 11.33 4.47 85.56 0.38 11.72 16 10 N -0.53 -24.51 5.23 -887.55 -4.65 -29.16 16 11 C 0.04 1.68 6.12 86.65 0.53 2.21 16 12 C -0.10 -3.00 6.61 31.80 0.21 -2.79 16 13 C -0.06 -1.72 3.18 -9.92 -0.03 -1.75 16 14 H 0.08 2.10 7.94 -2.39 -0.02 2.09 16 15 C -0.15 -3.51 5.05 -10.79 -0.05 -3.57 16 16 C -0.16 -3.05 10.19 30.62 0.31 -2.74 16 17 C -0.19 -4.01 9.59 30.62 0.29 -3.72 16 18 C 0.04 1.50 6.13 86.45 0.53 2.03 16 19 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 20 H -0.04 -2.25 7.83 -2.38 -0.02 -2.27 16 21 H 0.00 -0.12 8.08 -2.39 -0.02 -0.14 16 22 H 0.02 0.91 7.81 -2.38 -0.02 0.89 16 23 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 24 H 0.08 2.22 7.64 -2.38 -0.02 2.20 16 25 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 26 H 0.11 2.51 7.80 -2.38 -0.02 2.49 16 27 H 0.10 1.70 8.07 -2.39 -0.02 1.68 16 28 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 31 H 0.02 0.72 7.77 -2.39 -0.02 0.70 16 32 H 0.07 2.71 7.31 -2.39 -0.02 2.69 16 Total: -1.00 -65.95 262.17 1.59 -64.36 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: 1.06 Total: 4.43 kcal Atomic # 6 Polarization: -32.05 SS G_CDS: 2.86 Total: -29.19 kcal Atomic # 7 Polarization: -82.63 SS G_CDS: -4.36 Total: -86.99 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -65.95 1.59 -64.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306610154.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.749 kcal (2) G-P(sol) polarization free energy of solvation -65.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds